RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CREB3O43889 395 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 TOP3BO95985 862 aaKnown RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 AXLP30530 894 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 SESN2P58004 480 aaPredicted RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 PITX1P78337 314 aaPredicted RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 RFWD3Q6PCD5 774 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 HACE1Q8IYU2 909 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 NME8Q8N427 588 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 CCNYQ8ND76 341 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 STKLD1Q8NE28 680 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 NPLOC4Q8TAT6 608 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 RNF139Q8WU17 664 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 FERMT1Q9BQL6 677 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 ZNF395Q9H8N7 513 aaPredicted RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 KCNK4Q9NYG8 393 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 MARCOQ9UEW3 520 aaPredicted RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 SDR42E2A6NKP2 422 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 CLDN5O00501 218 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 F2P00734 622 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 TPBGLP0DKB5 382 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 CNTFP26441 200 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 CCNHP51946 323 aaPredicted RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 IRX4P78413 519 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 KRT72Q14CN4 511 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 SNX17Q15036 470 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 PRAMEF19Q5SWL8 479 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 CES4AQ5XG92 561 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 RINLQ6ZS11 566 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 BRI3BPQ8WY22 251 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 MCUR1Q96AQ8 359 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 P2RY11Q96G91 374 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 NMUR2Q9GZQ4 415 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 RCOR3Q9P2K3 495 aaPredicted RBP13.55□□□□□ -0.24
LDLR-203ENST00000535915 SLC17A6Q9P2U8 582 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 SLC45A1Q9Y2W3 748 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 ZNF236Q9UL36 1845 aa13.55□□□□□ -0.24
LDLR-203ENST00000535915 H3BRJ5 948 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 GSC2O15499 205 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 BPGMP07738 259 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 MLNP12872 115 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 GNAZP19086 355 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 ACAT1P24752 427 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 MGAT1P26572 445 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 CCNG1P51959 295 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 GTF2A2P52657 109 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 LILRA4P59901 499 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 OCRLQ01968 901 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 NME3Q13232 169 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 TEX44Q53QW1 395 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 C4orf50Q6ZRC1 276 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 OSTM1Q86WC4 334 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 CRLF3Q8IUI8 442 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 CDKL2Q92772 493 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 DUSP16Q9BY84 665 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.54□□□□□ -0.241e-6■■■□□ 15.9
LDLR-203ENST00000535915 RPL26L1Q9UNX3 145 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 NUP205Q92621 2012 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 M0QYT0 321 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 OPHN1O60890 802 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 DAB1O75553 588 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 BEST1O76090 585 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 KCNE1P15382 129 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 HIC1Q14526 733 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 STEAP4Q687X5 459 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 LRRC8BQ6P9F7 803 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 ZCCHC23Q6ZST2 131 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 PLEKHH3Q7Z736 793 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 LRRC4Q9HBW1 653 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 TSC2P49815 1807 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 MBLAC1A4D2B0 266 aaPredicted RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 BIRC5O15392 142 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 ALDH1A2O94788 518 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 PSMB4P28070 264 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 NOS2P35228 1153 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 NDUFV1P49821 464 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 MFSD10Q14728 455 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 TAF11Q15544 211 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 SMAD1Q15797 465 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 OTUD1Q5VV17 481 aaPredicted RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 TIFABQ6ZNK6 161 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 CYS1Q717R9 158 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 MARK2Q7KZI7 788 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 PSTKQ8IV42 348 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.54□□□□□ -0.24
LDLR-203ENST00000535915 ENDOVQ8N8Q3 282 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 PPP1R14CQ8TAE6 165 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 RAB3IL1Q8TBN0 382 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 HNRNPABQ99729 332 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 MED10Q9BTT4 135 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 WWP1Q9H0M0 922 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 TAS2R1Q9NYW7 299 aa13.54□□□□□ -0.24
LDLR-203ENST00000535915 PPARGC1AQ9UBK2 798 aaKnown RBP13.54□□□□□ -0.24
LDLR-203ENST00000535915 TREHO43280 583 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 NPR3P17342 541 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 AQP5P55064 265 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 DEUP1Q05D60 604 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 STX3Q13277 289 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 PDK1Q15118 436 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 UBXN11Q5T124 520 aa13.53□□□□□ -0.24
LDLR-203ENST00000535915 SYPL2Q5VXT5 272 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms