RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 HNRNPDQ14103 355 aaKnown RBP15.34■□□□□ 0.05
VPS28-215ENST00000531924 OR2I1PQ8NGU4 316 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 OR2T3Q8NH03 318 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 CYB5D2Q8WUJ1 264 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 SNX19Q92543 992 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 HSFY1Q96LI6 401 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 ADAM33Q9BZ11 813 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 STIM2Q9P246 746 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 STOML2Q9UJZ1 356 aa15.34■□□□□ 0.05
VPS28-215ENST00000531924 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.34■□□□□ 0.05
VPS28-215ENST00000531924 H0Y626 953 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 IRAK2O43187 625 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 SART1O43290 800 aaKnown RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 TRIM16O95361 564 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 AFPP02771 609 aaKnown RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 PABPC1P11940 636 aaKnown RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 HLA-EP13747 358 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 HLA-FP30511 346 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 STX17P56962 302 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 ST8SIA6P61647 398 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 GCNT1Q02742 428 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 SLC14A1Q13336 389 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 PKDCCQ504Y2 493 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 DCAF12L1Q5VU92 463 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 TMEM215Q68D42 235 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 TTI2Q6NXR4 508 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 MSANTD2Q6P1R3 559 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 RFWD3Q6PCD5 774 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 PIP4P1Q86T03 277 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 CREBRFQ8IUR6 639 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 ZCCHC9Q8N567 271 aaKnown RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 EHBP1Q8NDI1 1231 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 KAT5Q92993 513 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 FAM149B1Q96BN6 582 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 TRIM62Q9BVG3 475 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 SCNM1Q9BWG6 230 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 IRX2Q9BZI1 471 aaPredicted RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 LHX5Q9H2C1 402 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 DNAAF2Q9NVR5 837 aaKnown RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 NFE2L3Q9Y4A8 694 aa15.33■□□□□ 0.04
VPS28-215ENST00000531924 MAP1BP46821 2468 aaKnown RBP15.33■□□□□ 0.04
VPS28-215ENST00000531924 KMT2BQ9UMN6 2715 aaPredicted RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 GON4LQ3T8J9 2241 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 METTL12A8MUP2 240 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 C1QTNF9BB2RNN3 333 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 KCNJ18B7U540 433 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 PPP1R3GB7ZBB8 358 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 RNF225M0QZC1 329 aaPredicted RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 CAPN9O14815 690 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 BCAT2O15382 392 aaPredicted RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 MED7O43513 233 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 ACSL4O60488 711 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 CALCAP01258 141 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 DNTTP04053 509 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 DLDP09622 509 aaKnown RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 C1QTNF9P0C862 333 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 COPAP53621 1224 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 RING1Q06587 406 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 KCNH2Q12809 1159 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 GRIK2Q13002 908 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 PAK1Q13153 545 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 CAMK2GQ13555 558 aaPredicted RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 MPP7Q5T2T1 576 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 MBLAC2Q68D91 279 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 FOXR2Q6PJQ5 311 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 MFN1Q8IWA4 741 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 HJURPQ8NCD3 748 aaPredicted RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 GANCQ8TET4 914 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 DNASE2BQ8WZ79 361 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 SERPINB11Q96P15 392 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 SRRTQ9BXP5 876 aaKnown RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 INTS2Q9H0H0 1204 aaKnown RBP15.32■□□□□ 0.04
VPS28-215ENST00000531924 FBRSQ9HAH7 460 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 SUN2Q9UH99 717 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 PLXND1Q9Y4D7 1925 aa15.32■□□□□ 0.04
VPS28-215ENST00000531924 GOLGA6L7A0A1B0GV03 622 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 HYAL3O43820 417 aaPredicted RBP15.31■□□□□ 0.04
VPS28-215ENST00000531924 TOP3BO95985 862 aaKnown RBP15.31■□□□□ 0.04
VPS28-215ENST00000531924 ACADSBP45954 432 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 CDH18Q13634 790 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 MORC3Q14149 939 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 TTC31Q49AM3 519 aaPredicted RBP15.31■□□□□ 0.04
VPS28-215ENST00000531924 PIK3R6Q5UE93 754 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 IL27RAQ6UWB1 636 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 ADIPOR2Q86V24 386 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 ARHGEF19Q8IW93 802 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 SCUBE3Q8IX30 993 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 CARNMT1Q8N4J0 409 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 ZNF366Q8N895 744 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.31■□□□□ 0.044e-6■□□□□ 11.3
VPS28-215ENST00000531924 CLEC4CQ8WTT0 213 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 AZIN2Q96A70 460 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 PCED1AQ9H1Q7 454 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 UBE2TQ9NPD8 197 aaPredicted RBP15.31■□□□□ 0.04
VPS28-215ENST00000531924 EIF2B4Q9UI10 523 aaKnown RBP15.31■□□□□ 0.04
VPS28-215ENST00000531924 CEP83Q9Y592 693 aa15.31■□□□□ 0.04
VPS28-215ENST00000531924 TMEM8BA6NDV4 472 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 SH3BP5O60239 455 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 RNASEH1O60930 286 aaKnown RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 GABBR2O75899 941 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms