RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 NUP85Q9BW27 656 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 KLF16Q9BXK1 252 aaPredicted RBP10.44□□□□□ -0.74
NUP54-203ENST00000504173 FAM126AQ9BYI3 521 aaPredicted RBP10.44□□□□□ -0.74
NUP54-203ENST00000504173 GKN1Q9NS71 199 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 SEMA4GQ9NTN9 838 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 RRN3Q9NYV6 651 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 CFAP97Q9P2B7 532 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 LSM7Q9UK45 103 aaKnown RBP10.44□□□□□ -0.74
NUP54-203ENST00000504173 SH3BP1Q9Y3L3 701 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 HBS1LQ9Y450 684 aaKnown RBP10.44□□□□□ -0.74
NUP54-203ENST00000504173 PCDHA13Q9Y5I0 950 aa10.44□□□□□ -0.74
NUP54-203ENST00000504173 AKAP13Q12802 2813 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 HELZP42694 1942 aaKnown RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 SYNJ2BP-COX16A0A087WUM0 186 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 C2CD4BA6NLJ0 364 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 M0QYT0 321 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 ARHGAP6O43182 974 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 IRAK2O43187 625 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 CYP1A2P05177 515 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 TCF3P15923 654 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 DESP17661 470 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 MAGEA9P43362 315 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 TBX4P57082 545 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 RPL7AP62424 266 aaKnown RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 CCZ1BP86790 482 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 CCZ1P86791 482 aaPredicted RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 ZXDBP98169 803 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 ATP11AP98196 1134 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 CSTF1Q05048 431 aaKnown RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 NME3Q13232 169 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 NNTQ13423 1086 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 TRIP4Q15650 581 aaPredicted RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 CDO1Q16878 200 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 SLC25A52Q3SY17 297 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 PPP1R15BQ5SWA1 713 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 IL31Q6EBC2 164 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 TRNP1Q6NT89 227 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 CC2D1AQ6P1N0 951 aaPredicted RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 VITQ6UXI7 678 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 ACRBPQ8NEB7 543 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 ZNF564Q8TBZ8 553 aaPredicted RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 DEPDC1BQ8WUY9 529 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 RSAD2Q8WXG1 361 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 PLD4Q96BZ4 506 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 CFAP57Q96MR6 1250 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 TBCBQ99426 244 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 NPY6RQ99463 290 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 DDX23Q9BUQ8 820 aaKnown RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 PLA2G2FQ9BZM2 168 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 SPATA6Q9NWH7 488 aaPredicted RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 THG1LQ9NWX6 298 aaKnown RBP10.43□□□□□ -0.74
NUP54-203ENST00000504173 DDIT4Q9NX09 232 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 COX16Q9P0S2 106 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 CTTNBP2NLQ9P2B4 639 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 UVRAGQ9P2Y5 699 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 INTUQ9ULD6 942 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 WASF3Q9UPY6 502 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 WDFY3Q8IZQ1 3526 aa10.43□□□□□ -0.74
NUP54-203ENST00000504173 SCAMP3O14828 347 aaKnown RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 GDF9O60383 454 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 STC2O76061 302 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 IGLV3-25P01717 112 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 APOEP02649 317 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 PSMC3P17980 439 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 PSMA2P25787 234 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 CORO1AP31146 461 aaKnown RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 PTPN9P43378 593 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 HARS2P49590 506 aaKnown RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 ZNF143P52747 638 aaPredicted RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 KRT83P78385 493 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 DEUP1Q05D60 604 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 GRM2Q14416 872 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 C15orf59Q2T9L4 293 aaPredicted RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 CCDC14Q49A88 953 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 OTUD1Q5VV17 481 aaPredicted RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 PRR23BQ6ZRT6 265 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 SND1Q7KZF4 910 aaKnown RBP eCLIP10.42□□□□□ -0.74
NUP54-203ENST00000504173 KIAA1328Q86T90 577 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 LURAP1LQ8IV03 231 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 MFSD6LQ8IWD5 586 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 SLC44A3Q8N4M1 653 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 RIN3Q8TB24 985 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 GATA6Q92908 595 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 RNF34Q969K3 372 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 WBP2Q969T9 261 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 LRRC3BQ96PB8 259 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 DESI2Q9BSY9 194 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 RPP25Q9BUL9 199 aaKnown RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 TRMT61BQ9BVS5 477 aaKnown RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 OSBPL6Q9BZF3 934 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 FOXQ1Q9C009 403 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 DCLK3Q9C098 648 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 PRMT8Q9NR22 394 aaPredicted RBP10.42□□□□□ -0.74
NUP54-203ENST00000504173 SLC2A4RGQ9NR83 387 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 RXFP3Q9NSD7 469 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 ANAPC7Q9UJX3 599 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 TLR6Q9Y2C9 796 aa10.42□□□□□ -0.74
NUP54-203ENST00000504173 E2F8A0AVK6 867 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 TMEM191CA6NGB0 347 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 SLC9A3R1O14745 358 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms