RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 UBXN6Q9BZV1 441 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PDGFCQ9NRA1 345 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 CD274Q9NZQ7 290 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 FAM8A1Q9UBU6 413 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 C15orf41Q9Y2V0 281 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 MYH8P13535 1937 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 LTFP02788 710 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 CRABP2P29373 138 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 NNMTP40261 264 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 CCDC15Q0P6D6 951 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 OVOS1Q6IE37 1185 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 LCLAT1Q6UWP7 414 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC24A3Q9HC58 644 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 ZDHHC18Q9NUE0 388 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 ADAM28Q9UKQ2 775 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PCDHB8Q9UN66 801 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SORCS3Q9UPU3 1222 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 NR2E1Q9Y466 385 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 TULP2O00295 520 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PFDN1O60925 122 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SOAT2O75908 522 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 AKR1A1P14550 325 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 KCNA4P22459 653 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 GLRBP48167 497 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 JAG1P78504 1218 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PRKAA1Q13131 559 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 NFE2Q16621 373 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 HSDL1Q3SXM5 330 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 UGT3A1Q6NUS8 523 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PSTKQ8IV42 348 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC22A9Q8IVM8 553 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PCSK9Q8NBP7 692 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 STK32AQ8WU08 396 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SLCO2A1Q92959 643 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SGF29Q96ES7 293 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 TBL1YQ9BQ87 522 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 APOBEC3GQ9HC16 384 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 PRG3Q9Y2Y8 225 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 AKAP10O43572 662 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 TRIM13O60858 407 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 DAB1O75553 588 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 ARF4P18085 180 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 KPNA1P52294 538 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 ZC3H12AQ5D1E8 599 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 NOL9Q5SY16 702 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 ACMSDQ8TDX5 336 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 FBXL18Q96ME1 805 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 CPXM1Q96SM3 734 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SHCBP1LQ9BZQ2 653 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 SOX13Q9UN79 622 aa11.04□□□□□ -0.64
LIMCH1-205ENST00000503057 ZNF536O15090 1300 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 A0A096LPK6 155 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 C2orf81A6NN90 581 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TPP1O14773 563 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 CYBBP04839 570 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 ATP4AP20648 1035 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 CYP2C18P33260 490 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 KCNK10P57789 538 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 ITGA9Q13797 1035 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 KCTD19Q17RG1 926 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 PPP1R26Q5T8A7 1209 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 B3GALNT2Q8NCR0 500 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 SNX19Q92543 992 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 GLT1D1Q96MS3 346 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 ULBP1Q9BZM6 244 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 CHST12Q9NRB3 414 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 DLGAP2Q9P1A6 1054 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TIMM13Q9Y5L4 95 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 RAD54BQ9Y620 910 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 DCDC2CA8MYV0 355 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 E9PBE3 544 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 KLHL41O60662 606 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 YBX3P16989 372 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 CD151P48509 253 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 RGS4P49798 205 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 PHEXP78562 749 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC34A1Q06495 639 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 ARCQ7LC44 396 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 BLOC1S5Q8TDH9 187 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 CELF6Q96J87 481 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 SERPINB11Q96P15 392 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 EBNA1BP2Q99848 306 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 FBXO44Q9H4M3 255 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TCF7L2Q9NQB0 619 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 IL1RAPL1Q9NZN1 696 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 ZNF214Q9UL59 606 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 PAPPAQ13219 1627 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 NWD2Q9ULI1 1742 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TCRBV9S1A1TA0A576 114 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC15A5A6NIM6 579 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 BIRC5O15392 142 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TMCC1O94876 653 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 VNN1O95497 513 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 FSCN1Q16658 493 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 AASDHQ4L235 1098 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 BORCS6Q96GS4 357 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 SENP8Q96LD8 212 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 IL22Q9GZX6 179 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TRPC7Q9HCX4 862 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 RBM22Q9NW64 420 aaKnown RBP eCLIP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms