RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 GINS2Q9Y248 185 aa16.91■□□□□ 0.3
COL6A1-206ENST00000498614 SCN1AP35498 2009 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.9■□□□□ 0.3
COL6A1-206ENST00000498614 SNNO75324 88 aaPredicted RBP16.9■□□□□ 0.3
COL6A1-206ENST00000498614 CSH1P0DML2 217 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 CSH2P0DML3 217 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 IL4RP24394 825 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 SREBF2Q12772 1141 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 RASIP1Q5U651 963 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 TTC30AQ86WT1 665 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 SCUBE3Q8IX30 993 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 PLD5Q8N7P1 536 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 LPIN3Q9BQK8 851 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 USP29Q9HBJ7 922 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 SNX9Q9Y5X1 595 aa16.9■□□□□ 0.3
COL6A1-206ENST00000498614 SERPINA6P08185 405 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 PRKCHP24723 683 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 RBL1P28749 1068 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 TM4SF4P48230 202 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 TMEM62Q0P6H9 643 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 OLFML1Q6UWY5 402 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 KYAT3Q6YP21 454 aaKnown RBP16.89■□□□□ 0.3
COL6A1-206ENST00000498614 CAND1Q86VP6 1230 aaKnown RBP16.89■□□□□ 0.3
COL6A1-206ENST00000498614 PPP2R3CQ969Q6 453 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 HHIPL1Q96JK4 782 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 C16orf70Q9BSU1 422 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 SPATA16Q9BXB7 569 aa16.89■□□□□ 0.3
COL6A1-206ENST00000498614 KAT6AQ92794 2004 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 HMX2A2RU54 273 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 SDR42E2A6NKP2 422 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 BPGMP07738 259 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 CDK7P50613 346 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 IRX4P78413 519 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 SLC25A3Q00325 362 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 CUL3Q13618 768 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 RNF111Q6ZNA4 994 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 SESTD1Q86VW0 696 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 MAP7D3Q8IWC1 876 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 NDUFAF2Q8N183 169 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 PQLC3Q8N755 202 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 PPTC7Q8NI37 304 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 GTF3C2Q8WUA4 911 aaPredicted RBP16.89■□□□□ 0.29
COL6A1-206ENST00000498614 PYDC1Q8WXC3 89 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 SNRNP25Q9BV90 132 aaKnown RBP16.89■□□□□ 0.29
COL6A1-206ENST00000498614 B3GNT5Q9BYG0 378 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 MIS12Q9H081 205 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 S100A14Q9HCY8 104 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 NME7Q9Y5B8 376 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 PLXNA1Q9UIW2 1896 aa16.89■□□□□ 0.29
COL6A1-206ENST00000498614 H3BRB1 525 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 APOL1O14791 398 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 BCAR1P56945 870 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 STX3Q13277 289 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 KYAT1Q16773 422 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 LRRC36Q1X8D7 754 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 PPP6R3Q5H9R7 873 aaPredicted RBP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 MROH9Q5TGP6 573 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 TRMT10BQ6PF06 316 aaKnown RBP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 C17orf99Q6UX52 265 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 PPP1R13LQ8WUF5 828 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 C1orf21Q9H246 121 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 TUT1Q9H6E5 874 aaKnown RBP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 PCDH18Q9HCL0 1135 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 MKS1Q9NXB0 559 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 SNTG2Q9NY99 539 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 KIAA1257Q9ULG3 409 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 HCRTO43612 131 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 FKBP6O75344 327 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 TFE3P19532 575 aaPredicted RBP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 SDC4P31431 198 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 CDK18Q07002 472 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 NOGQ13253 232 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 TBCCQ15814 346 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 KIZQ2M2Z5 673 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 SLC5A9Q2M3M2 681 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 LIN52Q52LA3 116 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 LGSNQ5TDP6 509 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 SHCBP1Q8NEM2 672 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 PCDH19Q8TAB3 1148 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 KHSRPQ92945 711 aaKnown RBP eCLIP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 ZNF778Q96MU6 729 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 ZMAT2Q96NC0 199 aaKnown RBP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 ZFYVE28Q9HCC9 887 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 DMAP1Q9NPF5 467 aaPredicted RBP16.88■□□□□ 0.29
COL6A1-206ENST00000498614 PAK5Q9P286 719 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 SOX13Q9UN79 622 aa16.88■□□□□ 0.29
COL6A1-206ENST00000498614 ARHGAP42A6NI28 874 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 SORBS2O94875 1100 aaKnown RBP16.87■□□□□ 0.29
COL6A1-206ENST00000498614 STAU1O95793 577 aaKnown RBP16.87■□□□□ 0.29
COL6A1-206ENST00000498614 ZBED1O96006 694 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 AOC1P19801 751 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 SLC6A3Q01959 620 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 WASHC5Q12768 1159 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 TUBB3Q13509 450 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 HNRNPDQ14103 355 aaKnown RBP16.87■□□□□ 0.29
COL6A1-206ENST00000498614 PDK2Q15119 407 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 GRIK4Q16099 956 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 ZNF792Q3KQV3 632 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 SFT2D3Q587I9 215 aa16.87■□□□□ 0.29
COL6A1-206ENST00000498614 RALGPS1Q5JS13 557 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms