RNA–Protein interactions for RNA: ENST00000495071.6

SUPT20H-222, Transcript of SPT20 homolog, SAGA complex component, human

TSL 5

Gene SUPT20H, Length 3,669 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SUPT20H-222	ENST00000495071	RNF19A	Q9NV58	838 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MFHAS1	Q9Y4C4	1052 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ASB3	Q9Y575	518 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PLIN3	O60664	434 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	HSPA4L	O95757	839 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	RALB	P11234	206 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GOT1	P17174	413 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	AOC1	P19801	751 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	L1CAM	P32004	1257 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ROR2	Q01974	943 aa	Known RBP	13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GRAMD1B	Q3KR37	738 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	RABGAP1L	Q5R372	815 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MBLAC2	Q68D91	279 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	RAPH1	Q70E73	1250 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CMTM5	Q96DZ9	223 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CSPG4P5	Q96PW8	444 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	VCX3B	Q9H321	246 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ERAP1	Q9NZ08	941 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	G3BP2	Q9UN86	482 aa	Known RBP	13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	DPYSL4	O14531	572 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SNUPN	O95149	360 aa	Known RBP	13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ALDOA	P04075	364 aa	Known RBP	13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ITGA2B	P08514	1039 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ERVK-10	P10266	1014 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MLH1	P40692	756 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MAGEA6	P43360	314 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	NR2C2	P49116	596 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	INCA1	Q0VD86	236 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PEX6	Q13608	980 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TRIP10	Q15642	601 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SHKBP1	Q8TBC3	707 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PPP2R3C	Q969Q6	453 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	AGAP3	Q96P47	875 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TRAPPC9	Q96Q05	1148 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GPAM	Q9HCL2	828 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	S100A14	Q9HCY8	104 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	DTL	Q9NZJ0	730 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071	RPS6KL1	Q9Y6S9	549 aa		13.82	□□□□□ -0.2
SUPT20H-222	ENST00000495071		A0A088AWK7	358 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071		A0A0A0MRY4	1105 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CREB3	O43889	395 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GMPR	P36959	345 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	FDFT1	P37268	417 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MED21	Q13503	144 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	LPCAT4	Q643R3	524 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	DHDDS	Q86SQ9	333 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ST13P4	Q8IZP2	240 aa	Predicted RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PYROXD2	Q8N2H3	581 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SPATA13	Q96N96	652 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TUBGCP5	Q96RT8	1024 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SIKE1	Q9BRV8	207 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CSAD	Q9Y600	493 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PSAT1	Q9Y617	370 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	DCX	O43602	365 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	LGR5	O75473	907 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	FGF3	P11487	239 aa	Predicted RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SLC26A2	P50443	739 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	IFRD2	Q12894	506 aa	Predicted RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SEMA5A	Q13591	1074 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PPP2R5D	Q14738	602 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GLRA4	Q5JXX5	417 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CWF19L1	Q69YN2	538 aa	Known RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MFN1	Q8IWA4	741 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GALNT15	Q8N3T1	639 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CCDC185	Q8N715	623 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	OR6Y1	Q8NGX8	325 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SREK1	Q8WXA9	508 aa	Known RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.81	□□□□□ -0.2	5e-8	■■■□□ 18.2
SUPT20H-222	ENST00000495071	KCTD15	Q96SI1	283 aa	Predicted RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	C1orf21	Q9H246	121 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	R3HDML	Q9H3Y0	253 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	EBF3	Q9H4W6	596 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	FAM96A	Q9H5X1	160 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	VRTN	Q9H8Y1	702 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MAN1C1	Q9NR34	630 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MOCS1	Q9NZB8	636 aa		13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MYO18A	Q92614	2054 aa	Known RBP	13.81	□□□□□ -0.2
SUPT20H-222	ENST00000495071		E9PBE3	544 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	NFKBIE	O00221	500 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	RNF103	O00237	685 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	KLHL41	O60662	606 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GRK2	P25098	689 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CDK18	Q07002	472 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	BIRC2	Q13490	618 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	GJC2	Q5T442	439 aa	Predicted RBP	13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CMC1	Q7Z7K0	106 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TNS4	Q8IZW8	715 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	DNAAF3	Q8N9W5	541 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TRPM4	Q8TD43	1214 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	ACMSD	Q8TDX5	336 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	PPP1R36	Q96LQ0	422 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	MAF1	Q9H063	256 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	AP1G2	O75843	785 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	CPA3	P15088	417 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	SAT1	P21673	171 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	VGLL4	Q14135	290 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	DPYSL2	Q16555	572 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	FER1L6	Q2WGJ9	1857 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TMCO4	Q5TGY1	634 aa		13.8	□□□□□ -0.2
SUPT20H-222	ENST00000495071	TIFAB	Q6ZNK6	161 aa		13.8	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms