RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 ZSWIM2Q8NEG5 633 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 ZNF606Q8WXB4 792 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 FATE1Q969F0 183 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 GAS2L1Q99501 681 aaPredicted RBP11.98□□□□□ -0.49
BRCA1-222ENST00000493919 SPATA16Q9BXB7 569 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 NUP62CLQ9H1M0 184 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 IFT22Q9H7X7 185 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 NEK6Q9HC98 313 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 ALG13Q9NP73 1137 aaKnown RBP11.98□□□□□ -0.49
BRCA1-222ENST00000493919 AGPAT3Q9NRZ7 376 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 GID8Q9NWU2 228 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 KIF17Q9P2E2 1029 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 CACNG4Q9UBN1 327 aa11.98□□□□□ -0.49
BRCA1-222ENST00000493919 PLXNA4Q9HCM2 1894 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 CENPBD1B2RD01 187 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 FBP2O00757 339 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 INPPL1O15357 1258 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 NCAM2O15394 837 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 TGFB1I1O43294 461 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 FAM189A1O60320 539 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 POLR2CP19387 275 aaPredicted RBP11.97□□□□□ -0.49
BRCA1-222ENST00000493919 GARTP22102 1010 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 IFNA8P32881 189 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 SLC11A1P49279 550 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 S100A12P80511 92 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 SMARCB1Q12824 385 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 GPM6BQ13491 265 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 RNF220Q5VTB9 566 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 DENND2CQ68D51 928 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 CRTC1Q6UUV9 634 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 PPHLN1Q8NEY8 458 aaKnown RBP11.97□□□□□ -0.49
BRCA1-222ENST00000493919 AGAP11Q8TF27 550 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 TMA16Q96EY4 203 aaKnown RBP11.97□□□□□ -0.49
BRCA1-222ENST00000493919 GUCD1Q96NT3 240 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 OLFM3Q96PB7 478 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 CDX2Q99626 313 aaPredicted RBP11.97□□□□□ -0.49
BRCA1-222ENST00000493919 GOLGA2P5Q9HBQ8 144 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 MTMR10Q9NXD2 777 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 ANAPC5Q9UJX4 755 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 MAN1B1Q9UKM7 699 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 HBS1LQ9Y450 684 aaKnown RBP11.97□□□□□ -0.49
BRCA1-222ENST00000493919 STYXL1Q9Y6J8 313 aa11.97□□□□□ -0.49
BRCA1-222ENST00000493919 F8W810 466 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 PDE5AO76074 875 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 FAM107AO95990 144 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 FOSL2P15408 326 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 CALB2P22676 271 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 PPM1AP35813 382 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 TMPRSS15P98073 1019 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 KYAT1Q16773 422 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 SLC10A6Q3KNW5 377 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 HIBCHQ6NVY1 386 aaPredicted RBP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 TMEM173Q86WV6 379 aaPredicted RBP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 GPD1LQ8N335 351 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 SPATA20Q8TB22 786 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 FNDC8Q8TC99 324 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 HCAR2Q8TDS4 363 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 TMEM169Q96HH4 297 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 METTL2AQ96IZ6 378 aaKnown RBP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 ANKZF1Q9H8Y5 726 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 HSPBP1Q9NZL4 362 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 CNTN3Q9P232 1028 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 MOSPD1Q9UJG1 213 aa11.96□□□□□ -0.49
BRCA1-222ENST00000493919 CPSF3Q9UKF6 684 aaKnown RBP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 MAGED1Q9Y5V3 778 aaPredicted RBP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 SPTBN5Q9NRC6 3674 aaKnown RBP11.96□□□□□ -0.49
BRCA1-222ENST00000493919 PDCD11Q14690 1871 aaKnown RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 SYNJ2BP-COX16A0A087WUM0 186 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 SMIM28A0A1B0GU29 152 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 C5orf67F2Z3F1 127 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 H3BNC9 293 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 RTCAO00442 366 aaKnown RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 HGSO14964 777 aaPredicted RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 TSC22D2O75157 780 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 ITGB1P05556 798 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 FYNP06241 537 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 RETP07949 1114 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 MYZAPP0CAP1 466 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 ALAS2P22557 587 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 CRABP2P29373 138 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 PCK1P35558 622 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 TUBP50607 506 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 ROR1Q01973 937 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 TUSC3Q13454 348 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 TRIM65Q6PJ69 517 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 IKBIPQ70UQ0 350 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 GUF1Q8N442 669 aaKnown RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 HASPINQ8TF76 798 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 KIF12Q96FN5 646 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 PAAF1Q9BRP4 392 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 MRPL1Q9BYD6 325 aaKnown RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 UNKQ9C0B0 810 aaKnown RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 WASH6PQ9NQA3 447 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 RBAKQ9NYW8 714 aaPredicted RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 SPG21Q9NZD8 308 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 PNMA8BQ9ULN7 279 aaPredicted RBP11.96□□□□□ -0.5
BRCA1-222ENST00000493919 HPCAL4Q9UM19 191 aa11.96□□□□□ -0.5
BRCA1-222ENST00000493919 A6NCN8 305 aa11.95□□□□□ -0.5
BRCA1-222ENST00000493919 NRP1O14786 923 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms