RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ABI2Q9NYB9 513 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ARHGAP20Q9P2F6 1191 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 UXTQ9UBK9 157 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 HESX1Q9UBX0 185 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 NOCTQ9UK39 431 aaKnown RBP12.75□□□□□ -0.37
UPF3A-210ENST00000493727 NME7Q9Y5B8 376 aa12.75□□□□□ -0.37
UPF3A-210ENST00000493727 ATG2BQ96BY7 2078 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 EML5Q05BV3 1969 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 ANAPC1Q9H1A4 1944 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 SPEGQ15772 3267 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.74□□□□□ -0.37
UPF3A-210ENST00000493727 SSU72P8A0A1W2PR75 194 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 SPECC1L-ADORA2AF8WAN1 911 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 K7ESF4 209 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 M0QYV0 167 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CSH1P0DML2 217 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CSH2P0DML3 217 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 ANXA13P27216 316 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CNR2P34972 360 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 RPL10AP62906 217 aaKnown RBP12.74□□□□□ -0.37
UPF3A-210ENST00000493727 SRSF11Q05519 484 aaKnown RBP12.74□□□□□ -0.37
UPF3A-210ENST00000493727 DMWDQ09019 674 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 MAPRE1Q15691 268 aaKnown RBP12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CSRP2Q16527 193 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 STXBP5Q5T5C0 1151 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 C4orf50Q6ZRC1 276 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 PRR23BQ6ZRT6 265 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 SPATA2LQ8IUW3 424 aaPredicted RBP12.74□□□□□ -0.37
UPF3A-210ENST00000493727 PASD1Q8IV76 773 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CCDC170Q8IYT3 715 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CRYBG2Q8N1P7 616 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 MYCBPAPQ8TBZ2 947 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 ZNF606Q8WXB4 792 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 MYLPFQ96A32 169 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 RSPRY1Q96DX4 576 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 CYFIP2Q96F07 1278 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 KIF9Q9HAQ2 790 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 ABCB6Q9NP58 842 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 ZFYVE26Q68DK2 2539 aa12.74□□□□□ -0.37
UPF3A-210ENST00000493727 IGF2RP11717 2491 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SLC38A8A6NNN8 435 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 O00370 1275 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 KHNYNO15037 678 aaKnown RBP12.73□□□□□ -0.37
UPF3A-210ENST00000493727 ARHGAP6O43182 974 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 MX2P20592 715 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 AVPR1AP37288 418 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 KIF11P52732 1056 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SLC8A3P57103 927 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 CCZ1BP86790 482 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 CCZ1P86791 482 aaPredicted RBP12.73□□□□□ -0.37
UPF3A-210ENST00000493727 CYP4F8P98187 520 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 AMPD2Q01433 879 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 FMO1Q01740 532 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SIM2Q14190 667 aaPredicted RBP12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SPA17Q15506 151 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 HIF1AQ16665 826 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 ITPRIPL2Q3MIP1 535 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 COX20Q5RI15 118 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 ARHGAP17Q68EM7 881 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 TRIM72Q6ZMU5 477 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 LRRTM3Q86VH5 581 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 CMTM8Q8IZV2 173 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SLC2A14Q8TDB8 520 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 GIPC2Q8TF65 315 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 TFAP2BQ92481 460 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 MRPS31Q92665 395 aaKnown RBP12.73□□□□□ -0.37
UPF3A-210ENST00000493727 EXOC4Q96A65 974 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SAP130Q9H0E3 1048 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 CRTAC1Q9NQ79 661 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 SPTLC3Q9NUV7 552 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 GTF3C4Q9UKN8 822 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 TSPAN16Q9UKR8 245 aa12.73□□□□□ -0.37
UPF3A-210ENST00000493727 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.73□□□□□ -0.37
UPF3A-210ENST00000493727 TMCO5BA8MYB1 307 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 CHURC1-FNTBB4DL54 471 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 CLDN5O00501 218 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 PRAMEF12O95522 483 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 FAM200BP0CF97 657 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 FNTBP49356 437 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 CDR1P51861 262 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 BCAT1P54687 386 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 CTBSQ01459 385 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 GFPT1Q06210 699 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-210ENST00000493727 SRSF5Q13243 272 aaKnown RBP12.72□□□□□ -0.37
UPF3A-210ENST00000493727 CNGA2Q16280 664 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 CCDC142Q17RM4 750 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 NAA35Q5VZE5 725 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 DENND1BQ6P3S1 775 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 LCLAT1Q6UWP7 414 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 Q6ZS52 159 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 FAM35AQ86V20 835 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 TMEM139Q8IV31 216 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 TMEM35BQ8NCS4 154 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 MSANTD4Q8NCY6 345 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 DDX1Q92499 740 aaKnown RBP12.72□□□□□ -0.37
UPF3A-210ENST00000493727 PCED1BQ96HM7 432 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 FUBP3Q96I24 572 aaKnown RBP eCLIP12.72□□□□□ -0.37
UPF3A-210ENST00000493727 NOX5Q96PH1 765 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 SLC46A2Q9BY10 475 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 KCNF1Q9H3M0 494 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms