RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 MAP3K7CLP57077 242 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 SARNPP82979 210 aaKnown RBP11.09□□□□□ -0.63
USP4-214ENST00000491791 ACTN3Q08043 901 aaPredicted RBP11.09□□□□□ -0.63
USP4-214ENST00000491791 DSC1Q08554 894 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 SPARCL1Q14515 664 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 TMED2Q15363 201 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 PDK4Q16654 411 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 SKIDA1Q1XH10 827 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 BBS9Q3SYG4 887 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 DCAF6Q58WW2 860 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 PPP6R3Q5H9R7 873 aaPredicted RBP11.09□□□□□ -0.63
USP4-214ENST00000491791 SYPL2Q5VXT5 272 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 TRAF7Q6Q0C0 670 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 ZNF534Q76KX8 674 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 ECHDC2Q86YB7 292 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 ANKMY2Q8IV38 441 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 KLHDC8BQ8IXV7 354 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 RSPH1Q8WYR4 309 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 FERMT1Q9BQL6 677 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 OSBPL7Q9BZF2 842 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 ULBP1Q9BZM6 244 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 OSBPL2Q9H1P3 480 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 VPS11Q9H270 941 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 RABEP2Q9H5N1 569 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 KCNK9Q9NPC2 374 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 PRDM5Q9NQX1 630 aaPredicted RBP11.09□□□□□ -0.63
USP4-214ENST00000491791 MKS1Q9NXB0 559 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 SAMD15Q9P1V8 674 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 HEY1Q9Y5J3 304 aa11.09□□□□□ -0.63
USP4-214ENST00000491791 FRMPD3Q5JV73 1810 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 YJEFN3A6XGL0 299 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 E7ENQ6 273 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 POC1B-GALNT4F8VUJ3 575 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 GOLGA8MH3BSY2 632 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 MTSS1O43312 755 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 METTL18O95568 372 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 DHRS4L1P0CG22 281 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 KRT15P19012 456 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 NDUFV1P49821 464 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 AFF1P51825 1210 aaKnown RBP11.08□□□□□ -0.64
USP4-214ENST00000491791 DEUP1Q05D60 604 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 IFT88Q13099 833 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 DNAJC3Q13217 504 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 NAB1Q13506 487 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 ITGA7Q13683 1181 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 PARP6Q2NL67 630 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 SPDYAQ5MJ70 313 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 ANKRD20A2Q5SQ80 823 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 ANKRD20A1Q5TYW2 823 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 ANKRD20A3Q5VUR7 823 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 HEATR6Q6AI08 1181 aaKnown RBP11.08□□□□□ -0.64
USP4-214ENST00000491791 LRRC8BQ6P9F7 803 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 SLC39A5Q6ZMH5 540 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 CCDC121Q6ZUS5 278 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 RFX8Q6ZV50 586 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 RNF180Q86T96 592 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 SLC26A11Q86WA9 606 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 FAM131BQ86XD5 332 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP4-214ENST00000491791 AGGF1Q8N302 714 aaeCLIP11.08□□□□□ -0.64
USP4-214ENST00000491791 BANPQ8N9N5 519 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 DYDC1Q8WWB3 177 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 LPPQ93052 612 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 MTBPQ96DY7 904 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 VAT1Q99536 393 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 EBNA1BP2Q99848 306 aaKnown RBP11.08□□□□□ -0.64
USP4-214ENST00000491791 ADAM2Q99965 735 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 NAT9Q9BTE0 207 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 MED10Q9BTT4 135 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 PLAC1Q9HBJ0 212 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 PIGVQ9NUD9 493 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 TMEM30AQ9NV96 361 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 MOCS1Q9NZB8 636 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 TBK1Q9UHD2 729 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 PCDHB8Q9UN66 801 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 STARD13Q9Y3M8 1113 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 USP15Q9Y4E8 981 aaPredicted RBP11.08□□□□□ -0.64
USP4-214ENST00000491791 TTLL3Q9Y4R7 772 aa11.08□□□□□ -0.64
USP4-214ENST00000491791 LAMA2P24043 3122 aaKnown RBP11.08□□□□□ -0.64
USP4-214ENST00000491791 PTPRDP23468 1912 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 NLRC5Q86WI3 1866 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 FAM159BA6NKW6 160 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ERI2A8K979 691 aaKnown RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 TCP11X1B4DZS4 312 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 EEF2KO00418 725 aaKnown RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 BANF1O75531 89 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 STK10O94804 968 aaKnown RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 SUN1O94901 812 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 OAZ2O95190 189 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 APOEP02649 317 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 VIMP08670 466 aaKnown RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 CTSHP09668 335 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ALADP13716 330 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 VAV1P15498 845 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 CNTFP26441 200 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 HOXC13P31276 330 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 ACLYP53396 1101 aa11.07□□□□□ -0.64
USP4-214ENST00000491791 PITX1P78337 314 aaPredicted RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 NRG1Q02297 640 aaPredicted RBP11.07□□□□□ -0.64
USP4-214ENST00000491791 PPIDQ08752 370 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms