RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 F8P00451 2351 aa12.11□□□□□ -0.47
HDAC6-233ENST00000489352 ATP8B3O60423 1300 aa12.11□□□□□ -0.47
HDAC6-233ENST00000489352 OTOGQ6ZRI0 2925 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3DA0A087WVF3 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3IA0A087WXS9 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 A0A087X0B3 334 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3EA0A087X179 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3KA0A087X1G2 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 CPED1A4D0V7 1026 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3FA6NER0 549 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3LB9A6J9 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 GREM1O60565 184 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 RTN2O75298 545 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 VPS4BO75351 444 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 PENKP01210 267 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3HP0C7X1 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 LIPCP11150 499 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 GNL1P36915 607 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-233ENST00000489352 PLA2G4AP47712 749 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 SRSF6Q13247 344 aaKnown RBP12.1□□□□□ -0.47
HDAC6-233ENST00000489352 FYB2Q5VWT5 728 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3GQ6DHY5 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3CQ6IPX1 549 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TBC1D3Q8IZP1 549 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-233ENST00000489352 MYCT1Q8N699 235 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 CYB5D2Q8WUJ1 264 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 DUSP23Q9BVJ7 150 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 SLC2A11Q9BYW1 496 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 NEUROG2Q9H2A3 272 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TMEM245Q9H330 911 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 NLGN3Q9NZ94 848 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 KCND2Q9NZV8 630 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 TUBD1Q9UJT1 453 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 VPS4AQ9UN37 437 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 CYP46A1Q9Y6A2 500 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 NF1P21359 2839 aa12.1□□□□□ -0.47
HDAC6-233ENST00000489352 A0A1W2PP55 124 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 PMS2P1A4D2B8 440 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 ANKRD63C9JTQ0 380 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 LZTS3O60299 673 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-233ENST00000489352 NOBOXO60393 691 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 DTNBO60941 627 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 TCEA3O75764 348 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 TMEM191BP0C7N4 346 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 PTPN1P18031 435 aaKnown RBP12.09□□□□□ -0.47
HDAC6-233ENST00000489352 WARSP23381 471 aaKnown RBP12.09□□□□□ -0.47
HDAC6-233ENST00000489352 DCTP40126 519 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 SLC5A3P53794 718 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 CACNA2D1P54289 1103 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 POLE2P56282 527 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 ORC2Q13416 577 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-233ENST00000489352 KCNJ12Q14500 433 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 DSG4Q86SJ6 1040 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 VASH2Q86V25 355 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 OR6B3Q8NGW1 331 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 OR14C36Q8NHC7 312 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 KBTBD7Q8WVZ9 684 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 KCNB2Q92953 911 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 MIB2Q96AX9 1013 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 KLHDC7BQ96G42 594 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 HPDLQ96IR7 371 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 MED10Q9BTT4 135 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 ZNF518BQ9C0D4 1074 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 KDM4CQ9H3R0 1056 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 ZNF71Q9NQZ8 489 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-233ENST00000489352 UCKL1Q9NWZ5 548 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 COMMD8Q9NX08 183 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 PCDHGA7Q9Y5G6 932 aa12.09□□□□□ -0.47
HDAC6-233ENST00000489352 RP1P56715 2156 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.08□□□□□ -0.48
HDAC6-233ENST00000489352 CLDN5O00501 218 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 PLD2O14939 933 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 ATP5BP06576 529 aaKnown RBP12.08□□□□□ -0.48
HDAC6-233ENST00000489352 COL8A1P27658 744 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 ZNF177Q13360 481 aaPredicted RBP12.08□□□□□ -0.48
HDAC6-233ENST00000489352 POSTNQ15063 836 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 CDKN3Q16667 212 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 TMEM215Q68D42 235 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 SLC39A4Q6P5W5 647 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 SND1Q7KZF4 910 aaKnown RBP eCLIP12.08□□□□□ -0.48
HDAC6-233ENST00000489352 ZC3H18Q86VM9 953 aaKnown RBP12.08□□□□□ -0.48
HDAC6-233ENST00000489352 FBXO39Q8N4B4 442 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 KCNK16Q96T55 309 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 FUCA2Q9BTY2 467 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 ZHX3Q9H4I2 956 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 FBXO44Q9H4M3 255 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 SYNDIG1Q9H7V2 258 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 NCKIPSDQ9NZQ3 722 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 FZD4Q9ULV1 537 aa12.08□□□□□ -0.48
HDAC6-233ENST00000489352 NPHP3-ACAD11A0A0J9YXS1 232 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 MID1O15344 667 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 MTSS1O43312 755 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 FAM13AO94988 1023 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 ZDHHC11BP0C7U3 371 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 CD97P48960 835 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 ST8SIA6P61647 398 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 NAA30Q147X3 362 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-233ENST00000489352 C10orf120Q5SQS8 335 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 Q6ZNB5 142 aa12.07□□□□□ -0.48
HDAC6-233ENST00000489352 EFL1Q7Z2Z2 1120 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms