RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TMA16Q96EY4 203 aaKnown RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 TRIM11Q96F44 468 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 PPP1R9BQ96SB3 815 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 CPXM1Q96SM3 734 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 AGPAT1Q99943 283 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 FAM83CQ9BQN1 747 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 KLF16Q9BXK1 252 aaPredicted RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 GANQ9H2C0 597 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 LINC00597Q9H2U6 94 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 POLMQ9NP87 494 aaPredicted RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 METTL5Q9NRN9 209 aaKnown RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 DNAAF2Q9NVR5 837 aaKnown RBP8.36□□□□□ -1.07
USP40-216ENST00000485943 STIM2Q9P246 746 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 NAALADL1Q9UQQ1 740 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 TLR6Q9Y2C9 796 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 SIK3Q9Y2K2 1263 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 PCDHGA11Q9Y5H2 935 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 TECTAO75443 2155 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 CUL9Q8IWT3 2517 aa8.36□□□□□ -1.07
USP40-216ENST00000485943 SPTBN5Q9NRC6 3674 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 ATG2BQ96BY7 2078 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 H0Y626 953 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 H0Y858 1186 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 NRDCO43847 1150 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 SYNCRIPO60506 623 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 OLFM2O95897 454 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 TRUB2O95900 331 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 CYP17A1P05093 508 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 TARSP26639 723 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 NOS2P35228 1153 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 NNMTP40261 264 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 SSR1P43307 286 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 ATP1A2P50993 1020 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 GALK1P51570 392 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 VCPP55072 806 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 ST8SIA6P61647 398 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 CSTF1Q05048 431 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 STARD3Q14849 445 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 ANGPT1Q15389 498 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 CDO1Q16878 200 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 C2orf27AQ580R0 203 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 C10orf76Q5T2E6 689 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 SPECC1LQ69YQ0 1117 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 MMS22LQ6ZRQ5 1243 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 CEP68Q76N32 757 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 SCD5Q86SK9 330 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 TMEM110Q86TL2 294 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 NOP9Q86U38 636 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 C1orf210Q8IVY1 113 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 CCDC105Q8IYK2 499 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 DEFB106AQ8N104 65 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 CARNMT1Q8N4J0 409 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 ZNF276Q8N554 614 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 RPLP0P6Q8NHW5 317 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 DQX1Q8TE96 717 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 SLC20A1Q8WUM9 679 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 FUCA2Q9BTY2 467 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 EDEM3Q9BZQ6 932 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 CIPCQ9C0C6 399 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 XPO4Q9C0E2 1151 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 SIK2Q9H0K1 926 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 WDCPQ9H6R7 721 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 LUC7LQ9NQ29 371 aaKnown RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 HPS4Q9NQG7 708 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.35□□□□□ -1.07
USP40-216ENST00000485943 ASNSD1Q9NWL6 643 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 OSER1Q9NX31 292 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 PLK2Q9NYY3 685 aa8.35□□□□□ -1.07
USP40-216ENST00000485943 AJAP1Q9UKB5 411 aaPredicted RBP8.35□□□□□ -1.07
USP40-216ENST00000485943 MYOFQ9NZM1 2061 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 NRG2O14511 850 aaPredicted RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 TRDMT1O14717 391 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 IRAK2O43187 625 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 PAPSS1O43252 624 aaPredicted RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 AKR1B10O60218 316 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ACSL4O60488 711 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 TBL1XO60907 577 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 DAB1O75553 588 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 RNF8O76064 485 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 KAT7O95251 611 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 LATS1O95835 1130 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ERBB2P04626 1255 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ATP5BP06576 529 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 KRT3P12035 628 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 EIF2DP41214 584 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 GRIA2P42262 883 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 RPS9P46781 194 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 SCTRP47872 440 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ZBED6P86452 979 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ATP11AP98196 1134 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 NNTQ13423 1086 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 PKDCCQ504Y2 493 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 EOGTQ5NDL2 527 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ADGRF1Q5T601 910 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 CWF19L1Q69YN2 538 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 HEATR6Q6AI08 1181 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 MSANTD2Q6P1R3 559 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 SCYL2Q6P3W7 929 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 VASH1Q7L8A9 365 aaPredicted RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 TMC6Q7Z403 805 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms