RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 KIAA0907Q7Z7F0 614 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-217ENST00000479161 VSTM4Q8IW00 320 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 MCOLN2Q8IZK6 566 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.05■□□□□ 0.16
C9orf3-217ENST00000479161 ZBTB44Q8NCP5 570 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 DDI1Q8WTU0 396 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 CENPIQ92674 756 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-217ENST00000479161 C1orf74Q96LT6 269 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 FAM204AQ9H8W3 233 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 ARHGEF38Q9NXL2 777 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 PCDHGA2Q9Y5H1 932 aa16.05■□□□□ 0.16
C9orf3-217ENST00000479161 TYW5A2RUC4 315 aaKnown RBP16.04■□□□□ 0.16
C9orf3-217ENST00000479161 TBC1D3BA6NDS4 549 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 C2CD4BA6NLJ0 364 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 GRAP2O75791 330 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 KRT3P12035 628 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 HNRNPLP14866 589 aaKnown RBP eCLIP16.04■□□□□ 0.161e-10■■■□□ 17.7
C9orf3-217ENST00000479161 FLT3P36888 993 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 NHLH1Q02575 133 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 C5orf22Q49AR2 442 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 OTUD1Q5VV17 481 aaPredicted RBP16.04■□□□□ 0.16
C9orf3-217ENST00000479161 NADSYN1Q6IA69 706 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 SND1Q7KZF4 910 aaKnown RBP eCLIP16.04■□□□□ 0.16
C9orf3-217ENST00000479161 STRADAQ7RTN6 431 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 VPS36Q86VN1 386 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 NAT16Q8N8M0 369 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 HJURPQ8NCD3 748 aaPredicted RBP16.04■□□□□ 0.16
C9orf3-217ENST00000479161 RNF214Q8ND24 703 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 ADAM32Q8TC27 787 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 P2RY11Q96G91 374 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 PRMT1Q99873 361 aaKnown RBP16.04■□□□□ 0.16
C9orf3-217ENST00000479161 C11orf70Q9BRQ4 267 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 ISCUQ9H1K1 167 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 RETREG1Q9H6L5 497 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 ZSCAN32Q9NX65 697 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 MMP17Q9ULZ9 603 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 DOCK4Q8N1I0 1966 aa16.04■□□□□ 0.16
C9orf3-217ENST00000479161 H0Y858 1186 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 K7ESF4 209 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 RTN2O75298 545 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 MYBL1P10243 752 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 SLC6A4P31645 630 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 CNR2P34972 360 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 RNASE9P60153 205 aaKnown RBP16.03■□□□□ 0.16
C9orf3-217ENST00000479161 MESP2Q0VG99 397 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 PPP1R15BQ5SWA1 713 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 OR8K1Q8NGG5 319 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 FIBINQ8TAL6 211 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 WFIKKN2Q8TEU8 576 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 TRIM11Q96F44 468 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 HAPLN3Q96S86 360 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 DNAJC7Q99615 494 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 WDCPQ9H6R7 721 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 PIGVQ9NUD9 493 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 EBF1Q9UH73 591 aa16.03■□□□□ 0.16
C9orf3-217ENST00000479161 GOLGA8SH3BPF8 625 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 DDX3XO00571 662 aaKnown RBP eCLIP16.02■□□□□ 0.163e-11■■■□□ 16.8
C9orf3-217ENST00000479161 LILRB5O75023 590 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 PDGFRAP16234 1089 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 SDC4P31431 198 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 CASP14P31944 242 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 RDXP35241 583 aaKnown RBP16.02■□□□□ 0.16
C9orf3-217ENST00000479161 OXCT1P55809 520 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 SATB1Q01826 763 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 DEUP1Q05D60 604 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 SLC12A1Q13621 1099 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 ENPP2Q13822 863 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 C2CD6Q53TS8 623 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 EOGTQ5NDL2 527 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 PLEKHA7Q6IQ23 1121 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 TRNP1Q6NT89 227 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 ANKS1BQ7Z6G8 1248 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 IL17RCQ8NAC3 791 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 RPLP0P6Q8NHW5 317 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 ATOH1Q92858 354 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-217ENST00000479161 RNF34Q969K3 372 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 TBCBQ99426 244 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 SELENOOQ9BVL4 669 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 ADAM33Q9BZ11 813 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 METTL5Q9NRN9 209 aaKnown RBP16.02■□□□□ 0.16
C9orf3-217ENST00000479161 SEPT11Q9NVA2 429 aaKnown RBP16.02■□□□□ 0.16
C9orf3-217ENST00000479161 PARVAQ9NVD7 372 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 PLK2Q9NYY3 685 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 CALCOCO1Q9P1Z2 691 aa16.02■□□□□ 0.16
C9orf3-217ENST00000479161 VPS13AQ96RL7 3174 aa16.02■□□□□ 0.15
C9orf3-217ENST00000479161 RIF1Q5UIP0 2472 aaKnown RBP16.01■□□□□ 0.15
C9orf3-217ENST00000479161 ANKRD62A6NC57 917 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 F5H5T6 163 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 TPM1P09493 284 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 C7P10643 843 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 TACR2P21452 398 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 RFC1P35251 1148 aaPredicted RBP16.01■□□□□ 0.15
C9orf3-217ENST00000479161 SULT1E1P49888 294 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 DGKEP52429 567 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 ZNF143P52747 638 aaPredicted RBP16.01■□□□□ 0.15
C9orf3-217ENST00000479161 NRG1Q02297 640 aaPredicted RBP16.01■□□□□ 0.15
C9orf3-217ENST00000479161 CSTF1Q05048 431 aaKnown RBP16.01■□□□□ 0.15
C9orf3-217ENST00000479161 NME3Q13232 169 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 DMC1Q14565 340 aa16.01■□□□□ 0.15
C9orf3-217ENST00000479161 CCDC14Q49A88 953 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms