RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 GYS1P13807 737 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 SLC26A3P40879 764 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 PTDSS1P48651 473 aaKnown RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 NEK3P51956 506 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ARPC4P59998 168 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L24Q0WX57 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 CDH18Q13634 790 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L6PQ6QN14 398 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 HEATR4Q86WZ0 1026 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ATP6V0D2Q8N8Y2 350 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 SGF29Q96ES7 293 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 CINPQ9BW66 212 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 MUC3BQ9H195 1237 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ELOVL6Q9H5J4 265 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 DDX18Q9NVP1 670 aaKnown RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 PPP1R3GB7ZBB8 358 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 PRKCBP05771 671 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ADORA2BP29275 332 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ACADVLP49748 655 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 AGKQ53H12 422 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ITFG1Q8TB96 612 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 PUS3Q9BZE2 481 aaKnown RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ADAM28Q9UKQ2 775 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L10C9JJH3 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 GH2P01242 217 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 UBXN2AP68543 259 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF844Q08AG5 666 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 HELQQ8TDG4 1101 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 RPS6KB2Q9UBS0 482 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 RAB26Q9ULW5 256 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 TNS3Q68CZ2 1445 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 MED24O75448 989 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 AKR1B1P15121 316 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 PON1P27169 355 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 RENBPP51606 427 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 MAPK11Q15759 364 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 GALNTL6Q49A17 601 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 PABPC5Q96DU9 382 aaKnown RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 COX4I2Q96KJ9 171 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 NOS3P29474 1203 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ANKS6Q68DC2 871 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 DHDDSQ86SQ9 333 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 CRLS1Q9UJA2 301 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 RUVBL2Q9Y230 463 aaKnown RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 METTL21EPA6NDL7 271 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 MGRN1O60291 552 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 DGKIO75912 1065 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ALDH5A1P51649 535 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 OR2W6PQ8NHA6 318 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 GDF3Q9NR23 364 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 VPS45Q9NRW7 570 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 CCDC189A1A4V9 331 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ECM2O94769 699 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 CAMK2GQ13555 558 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 EIF3MQ7L2H7 374 aaKnown RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 SLC39A8Q9C0K1 460 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ANAPC2Q9UJX6 822 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 A0A0X1KG70 313 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 MDM4O15151 490 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ELF3P78545 371 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 DGKDQ16760 1214 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 IER5Q5VY09 327 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 UBE2E3Q969T4 207 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 SLC38A2Q96QD8 506 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF408Q9H9D4 720 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ICE1Q9Y2F5 2266 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 CAMTA2O94983 1202 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 SERPINA6P08185 405 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 PDHBP11177 359 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 RPS7P62081 194 aaKnown RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 GPAT2Q6NUI2 795 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 IGDCC4Q8TDY8 1250 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 HPDLQ96IR7 371 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 DNAJC16Q9Y2G8 782 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 SSNA1O43805 119 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 DHFRP00374 187 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 PGAM1P18669 254 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 CHRM3P20309 590 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 GCLCP48506 637 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 CSNK2BP67870 215 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 QRICH1Q2TAL8 776 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 IPMKQ8NFU5 416 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 PIH1D3Q9NQM4 214 aaKnown RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 SWSAP1Q6NVH7 229 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 PIWIL2Q8TC59 973 aaKnown RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 TTC3P53804 2025 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ERBB3P21860 1342 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 MYO3AQ8NEV4 1616 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 PSMD12O00232 456 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ATF6P18850 670 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 MACC1Q6ZN28 852 aa13.6□□□□□ -0.23
COL6A3-209ENST00000472056 ZCCHC2Q9C0B9 1178 aaKnown RBP13.6□□□□□ -0.23
COL6A3-209ENST00000472056 TGDSO95455 350 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 HOXC8P31273 242 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CPA2P48052 419 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CDC42P60953 191 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 TUBA1BP68363 451 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 TUBA1AQ71U36 451 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 DCP1BQ8IZD4 617 aaKnown RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 TEKT5Q96M29 485 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms