RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SNX19Q92543 992 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 FGF11Q92914 225 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 CCDC74AQ96AQ1 378 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 ELMO3Q96BJ8 720 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 NXPE2Q96DL1 559 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 PCED1BQ96HM7 432 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TMEM176AQ96HP8 235 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 SPATA17Q96L03 361 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 SYT15Q9BQS2 421 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 MRPL45Q9BRJ2 306 aaKnown RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 REEP2Q9BRK0 252 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TM6SF1Q9BZW5 370 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 DPEP3Q9H4B8 488 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 ASB7Q9H672 318 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 EBF2Q9HAK2 575 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 C17orf75Q9HAS0 396 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TM9SF3Q9HD45 589 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 MAGEC2Q9UBF1 373 aaPredicted RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 DERAQ9Y315 318 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 C2CD2Q9Y426 696 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 PCDHB1Q9Y5F3 818 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 PCDHGB2Q9Y5G2 931 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 ICE1Q9Y2F5 2266 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TLN1Q9Y490 2541 aaKnown RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 NOTCH2Q04721 2471 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 UBR5O95071 2799 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 ZFC3H1O60293 1989 aaKnown RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 E2F8A0AVK6 867 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 K7ENM7 598 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 ENC1O14682 589 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 EREGO14944 169 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 MDM4O15151 490 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 RRP8O43159 456 aaKnown RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 PCDHGA12O60330 932 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 HUS1O60921 280 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 PLA2G4BP0C869 781 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 C6P13671 934 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 TYRP14679 529 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 CES1P23141 567 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 PRKCHP24723 683 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 GNA15P30679 374 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 CTSKP43235 329 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 MYL7Q01449 175 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 BNIP3Q12983 259 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 GEN1Q17RS7 908 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 MDH1BQ5I0G3 518 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 ZNF468Q5VIY5 522 aaPredicted RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 BTBD8Q5XKL5 378 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 TMEM215Q68D42 235 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 ADALQ6DHV7 355 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 TRMT11Q7Z4G4 463 aaKnown RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 LIMS2Q7Z4I7 341 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 MYCT1Q8N699 235 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 CSGALNACT2Q8N6G5 542 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 EID2Q8N6I1 236 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 ZNF366Q8N895 744 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 EXD3Q8N9H8 876 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 CADM4Q8NFZ8 388 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 WASF1Q92558 559 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 GTF3C6Q969F1 213 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 BIRC7Q96CA5 298 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 SAAL1Q96ER3 474 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 FUBP3Q96I24 572 aaKnown RBP eCLIP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 KCNK16Q96T55 309 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 ZNF518BQ9C0D4 1074 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 NRSN2Q9GZP1 204 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 BLOC1S4Q9NUP1 217 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 GDAP2Q9NXN4 497 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 FTSJ1Q9UET6 329 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 IL17BQ9UHF5 180 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 SALL4Q9UJQ4 1053 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 NUDT5Q9UKK9 219 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 AGO2Q9UKV8 859 aaKnown RBP5.59□□□□□ -1.51
PTPN4-209ENST00000469511 STYXL1Q9Y6J8 313 aa5.59□□□□□ -1.51
PTPN4-209ENST00000469511 UTP20O75691 2785 aaKnown RBP5.59□□□□□ -1.52
PTPN4-209ENST00000469511 MYO9AB2RTY4 2548 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 NYNRINQ9P2P1 1898 aaKnown RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 A0A1B0GTQ1 180 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 PMS2P1A4D2B8 440 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 E9PAM4 449 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 CACNG3O60359 315 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 BEST1O76090 585 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 LDOC1O95751 146 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 MPOP05164 745 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 IGHV4-34P06331 123 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 KRT19P08727 400 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 MYF5P13349 255 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 ACO1P21399 889 aaKnown RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 PAX3P23760 479 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 GRK6P43250 576 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 NOP14P78316 857 aaKnown RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 GTF2BQ00403 316 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 INSM1Q01101 510 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 PLAURQ03405 335 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 ENPP2Q13822 863 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 SUZ12Q15022 739 aaKnown RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 TBC1D25Q3MII6 688 aa5.58□□□□□ -1.52
PTPN4-209ENST00000469511 PREPLQ4J6C6 727 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-209ENST00000469511 TMEM119Q4V9L6 283 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms