RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ATP6V1B2P21281 511 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 GCLCP48506 637 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 GTF2A2P52657 109 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 GNASQ5JWF2 1037 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 AADACL2Q6P093 401 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 CHSY1Q86X52 802 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 NSMCE2Q96MF7 247 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 FICDQ9BVA6 458 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 POLLQ9UGP5 575 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 DCXO43602 365 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 KRT20P35900 424 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 RPL5P46777 297 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 ZNF135P52742 658 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 FCGRTP55899 365 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 ARMCX4Q5H9R4 360 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 TTC27Q6P3X3 843 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 ISLR2Q6UXK2 745 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 ELMO3Q96BJ8 720 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 MUC3BQ9H195 1237 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 NDUFAF1Q9Y375 327 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 MAMLD1Q13495 774 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 GALNTL6Q49A17 601 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 NMRK1Q9NWW6 199 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 STMN3Q9NZ72 180 aa19.45■□□□□ 0.7
CCDC88B-204ENST00000463837 PHGDHO43175 533 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 HOXB8P17481 243 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 NFIL3Q16649 462 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 AMHR2Q16671 573 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 SETD9Q8NE22 299 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 TMEM109Q9BVC6 243 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 EDF1O60869 148 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 MT-CO1P00395 513 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 RPL14P50914 215 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 PGM5Q15124 567 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 FAM131BQ86XD5 332 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 VAT1Q99536 393 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 ACSS3Q9H6R3 686 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 ATAD3AQ9NVI7 634 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 DAPK2Q9UIK4 370 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 ASTN2O75129 1339 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 TRIM24O15164 1050 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 NR1H2P55055 460 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 PURAQ00577 322 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 NMRAL1Q9HBL8 299 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 TMEM114B3SHH9 223 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 SERPINA6P08185 405 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 MGAT1P26572 445 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 PPP3CAQ08209 521 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 CYP51A1Q16850 503 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 NT5DC4Q86YG4 428 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 IRF2BP1Q8IU81 584 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 DHRSXQ8N5I4 330 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 CLUHO75153 1309 aa19.44■□□□□ 0.7
CCDC88B-204ENST00000463837 JCHAINP01591 159 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 GSNP06396 782 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 MIPP30301 263 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 TP53BP2Q13625 1128 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 BLOC1S5Q8TDH9 187 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 PYDC1Q8WXC3 89 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 HAS1Q92839 578 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 HPS4Q9NQG7 708 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 CAB39Q9Y376 341 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 PRRG1O14668 218 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 CRTAMO95727 393 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 HMGCRP04035 888 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 MAD2L1Q13257 205 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 ZCCHC23Q6ZST2 131 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 TRPC4APQ8TEL6 797 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 SHC3Q92529 594 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 ASB7Q9H672 318 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 C6orf203Q9P0P8 240 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 EML1O00423 815 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 CNOT3O75175 753 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 GLP2RO95838 553 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 PPP3CCP48454 512 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 WASHC5Q12768 1159 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 TWF1Q12792 350 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 PDK3Q15120 406 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 HYIQ5T013 277 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 RIPOR1Q6ZS17 1223 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 PLEKHM3Q6ZWE6 761 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 ADGRF2Q8IZF7 708 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 TRPC7Q9HCX4 862 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 ETNK2Q9NVF9 386 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 AP3M1Q9Y2T2 418 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 A0A087X1B8 175 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 C1orf232A0A0U1RR37 186 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 ENTPD5O75356 428 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 EPS8Q12929 822 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 TRABD2AQ86V40 505 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 ZCCHC7Q8N3Z6 543 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 TNFRSF25Q93038 417 aa19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 UNKQ9C0B0 810 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-204ENST00000463837 NCF1BA6NI72 391 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 SIGLEC16A6NMB1 481 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 ERI2A8K979 691 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 PDZK1P1A8MUH7 402 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 NCF1CA8MVU1 366 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 KRT36O76013 467 aa19.42■□□□□ 0.7
CCDC88B-204ENST00000463837 MICAL2O94851 1124 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms