RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NR1H2P55055 460 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 CDH8P55286 799 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PRAMEP78395 509 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 CRY2Q49AN0 593 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 SWSAP1Q6NVH7 229 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 FASTKD5Q7L8L6 764 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 UBR7Q8N806 425 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 TMA16Q96EY4 203 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF668Q96K58 619 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 KCNK16Q96T55 309 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 MSTO1Q9BUK6 570 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PAIP2BQ9ULR5 123 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 BBOX1O75936 387 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 OSTNP61366 133 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 SNRPFP62306 86 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PATL1Q86TB9 770 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 DSELQ8IZU8 1212 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PQLC3Q8N755 202 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 SNX31Q8N9S9 440 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 FAM110BQ8TC76 370 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 KBTBD7Q8WVZ9 684 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 RAVER2Q9HCJ3 691 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 ARHGAP28Q9P2N2 729 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 EPS15L1Q9UBC2 864 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 RAB26Q9ULW5 256 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 CHRNGP07510 517 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 RALBP11234 206 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 GABRB2P47870 512 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 SESN2P58004 480 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 OLIG2Q13516 323 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 NOMO1Q15155 1222 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 Q3C1V9 767 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 IL23RQ5VWK5 629 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 OGFOD2Q6N063 350 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 NCCRP1Q6ZVX7 275 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF534Q76KX8 674 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 CDR2LQ86X02 465 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 CLVS1Q8IUQ0 354 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PLD6Q8N2A8 252 aaKnown RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 NLRP7Q8WX94 980 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 CNKSR2Q8WXI2 1034 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 EME1Q96AY2 570 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 PCDHAC1Q9H158 963 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 COQ10BQ9H8M1 238 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 FAIMQ9NVQ4 179 aa12.04□□□□□ -0.48
CPSF3-202ENST00000460593 C6orf203Q9P0P8 240 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-202ENST00000460593 BTBD19C9JJ37 291 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 BIRC5O15392 142 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 ZBED1O96006 694 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 SERPINE1P05121 402 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 PSMC3P17980 439 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 GARTP22102 1010 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 MLH1P40692 756 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 ZNF132P52740 706 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 ABCE1P61221 599 aaKnown RBP12.03□□□□□ -0.48
CPSF3-202ENST00000460593 DLG2Q15700 870 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 XKR5Q6UX68 686 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 ARCQ7LC44 396 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 SAMD3Q8N6K7 520 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 SIGLEC10Q96LC7 697 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 ZDHHC15Q96MV8 337 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 NPAS2Q99743 824 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 ACO2Q99798 780 aaKnown RBP12.03□□□□□ -0.48
CPSF3-202ENST00000460593 CDCA7Q9BWT1 371 aaPredicted RBP12.03□□□□□ -0.48
CPSF3-202ENST00000460593 PNPLA8Q9NP80 782 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 XPNPEP3Q9NQH7 507 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 SELENONQ9NZV5 590 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 STK39Q9UEW8 545 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 CDC14AQ9UNH5 594 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 TRUB2O95900 331 aaKnown RBP12.03□□□□□ -0.48
CPSF3-202ENST00000460593 PIK3R1P27986 724 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 THNSL1Q8IYQ7 743 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 LZICQ8WZA0 190 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 SLC29A1Q99808 456 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 SLC4A5Q9BY07 1137 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 HMGXB4Q9UGU5 601 aa12.03□□□□□ -0.48
CPSF3-202ENST00000460593 COL14A1Q05707 1796 aaKnown RBP12.03□□□□□ -0.48
CPSF3-202ENST00000460593 CHADO15335 359 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 SEC24DO94855 1032 aaPredicted RBP12.02□□□□□ -0.48
CPSF3-202ENST00000460593 HSPA4LO95757 839 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 MPSTP25325 297 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 EN1Q05925 392 aaPredicted RBP12.02□□□□□ -0.48
CPSF3-202ENST00000460593 ATP1A4Q13733 1029 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 CA9Q16790 459 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 NXNQ6DKJ4 435 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 TRNP1Q6NT89 227 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 TICAM1Q8IUC6 712 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 BBS5Q8N3I7 341 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 LRTOMTQ8WZ04 291 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 PAIP1Q9H074 479 aaKnown RBP12.02□□□□□ -0.48
CPSF3-202ENST00000460593 CAB39LQ9H9S4 337 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 CYP26B1Q9NR63 512 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 SORCS3Q9UPU3 1222 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 UBIAD1Q9Y5Z9 338 aa12.02□□□□□ -0.48
CPSF3-202ENST00000460593 FAM159BA6NKW6 160 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 SPAG6O75602 509 aa12.02□□□□□ -0.49
CPSF3-202ENST00000460593 LTFP02788 710 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms