RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 PPP1R14CQ8TAE6 165 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 SLC16A10Q8TF71 515 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 SPATA33Q96N06 139 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 GBP5Q96PP8 586 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 C11orf84Q9BUA3 381 aaPredicted RBP10.09□□□□□ -0.79
CD44-206ENST00000415148 PDZD7Q9H5P4 517 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 EIF2B3Q9NR50 452 aaKnown RBP10.09□□□□□ -0.79
CD44-206ENST00000415148 GPATCH2LQ9NWQ4 482 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 DNAJC28Q9NX36 388 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 NDE1Q9NXR1 346 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 PCDHGB4Q9UN71 923 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 PCDHGB5Q9Y5G0 923 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 ZSWIM8A7E2V4 1837 aa10.09□□□□□ -0.79
CD44-206ENST00000415148 F5H423 210 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 GRAP2O75791 330 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 ZMPSTE24O75844 475 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 SLC25A27O95847 323 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 F7P08709 466 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 CYP2C8P10632 490 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 ALOX15P16050 662 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 ADORA2AP29274 412 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 ARRB2P32121 409 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 GRIA1P42261 906 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 SLC1A6P48664 564 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 HDAC4P56524 1084 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 XIAPP98170 497 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 NIPAL4Q0D2K0 466 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 HNRNPDQ14103 355 aaKnown RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 CA9Q16790 459 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 HEATR6Q6AI08 1181 aaKnown RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 PMF1Q6P1K2 205 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 LRRC8BQ6P9F7 803 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 DENND5BQ6ZUT9 1274 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 MAVSQ7Z434 540 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 TRIM50Q86XT4 487 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 ARHGAP18Q8N392 663 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 HIPK4Q8NE63 616 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.08□□□□□ -0.8
CD44-206ENST00000415148 PPP2R3CQ969Q6 453 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 APOL6Q9BWW8 343 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 MAGEB5Q9BZ81 275 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 VCX3BQ9H321 246 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 ZDHHC7Q9NXF8 308 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 PACSIN3Q9UKS6 424 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 FZD9O00144 591 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 CCNT2O60583 730 aaKnown RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 ZNF189O75820 626 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 DGKIO75912 1065 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 C22orf31O95567 290 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 SERPINE1P05121 402 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 PYGLP06737 847 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 GJB1P08034 283 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 FGF3P11487 239 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 CLCN3P51790 818 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 AQP4P55087 323 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 RPL26P61254 145 aaKnown RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 SLC10A2Q12908 348 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 DLG1Q12959 904 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 CCNIQ14094 377 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 SLC5A9Q2M3M2 681 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 RABGAP1LQ5R372 815 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 PPP1R26Q5T8A7 1209 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 TEDDM1Q5T9Z0 273 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 VWA5B1Q5TIE3 1220 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 DPH6Q7L8W6 267 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 RSPH3Q86UC2 560 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 PPP4R1Q8TF05 950 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 JADE3Q92613 823 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 SPATA16Q9BXB7 569 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 ERAP1Q9NZ08 941 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 IL1RAPL1Q9NZN1 696 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 RCOR3Q9P2K3 495 aaPredicted RBP10.08□□□□□ -0.8
CD44-206ENST00000415148 HESX1Q9UBX0 185 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 DERAQ9Y315 318 aa10.08□□□□□ -0.8
CD44-206ENST00000415148 E2F8A0AVK6 867 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PAPSS1O43252 624 aaPredicted RBP10.07□□□□□ -0.8
CD44-206ENST00000415148 PLIN3O60664 434 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PEX10O60683 326 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PEX2P28328 305 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PRDX6P30041 224 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 RPL34P49207 117 aaKnown RBP10.07□□□□□ -0.8
CD44-206ENST00000415148 EPHB1P54762 984 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 LAMB3Q13751 1172 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PPP6R3Q5H9R7 873 aaPredicted RBP10.07□□□□□ -0.8
CD44-206ENST00000415148 EFHC1Q5JVL4 640 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 TREML2Q5T2D2 321 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PRAMEF18Q5VWM3 479 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 ARHGAP17Q68EM7 881 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 KCNT2Q6UVM3 1135 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PACS1Q6VY07 963 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 EEPD1Q7L9B9 569 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 UNC93AQ86WB7 457 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 TTC30AQ86WT1 665 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PSTKQ8IV42 348 aaKnown RBP10.07□□□□□ -0.8
CD44-206ENST00000415148 SCUBE3Q8IX30 993 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 TFB1MQ8WVM0 346 aaKnown RBP10.07□□□□□ -0.8
CD44-206ENST00000415148 TRAPPC12Q8WVT3 735 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 CCDC124Q96CT7 223 aaKnown RBP10.07□□□□□ -0.8
CD44-206ENST00000415148 CMTM5Q96DZ9 223 aa10.07□□□□□ -0.8
CD44-206ENST00000415148 PGLYRP2Q96PD5 576 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms