RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 ADAM22Q9P0K1 906 aa5.75□□□□□ -1.49
CLK1-202ENST00000409403 DLGAP2Q9P1A6 1054 aa5.75□□□□□ -1.49
CLK1-202ENST00000409403 TRIM10Q9UDY6 481 aa5.75□□□□□ -1.49
CLK1-202ENST00000409403 ARL2BPQ9Y2Y0 163 aa5.75□□□□□ -1.49
CLK1-202ENST00000409403 TMED5Q9Y3A6 229 aa5.75□□□□□ -1.49
CLK1-202ENST00000409403 SRPRBQ9Y5M8 271 aaKnown RBP5.75□□□□□ -1.49
CLK1-202ENST00000409403 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.75□□□□□ -1.49
CLK1-202ENST00000409403 FASNP49327 2511 aaKnown RBP5.75□□□□□ -1.49
CLK1-202ENST00000409403 PLXNA3P51805 1871 aa5.75□□□□□ -1.49
CLK1-202ENST00000409403 SCN9AQ15858 1988 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 ANKRD11Q6UB99 2663 aaPredicted RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 GPR179Q6PRD1 2367 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 A0A0G2JNJ9 132 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 KLF18A0A0U1RQI7 1052 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 TTC26A0AVF1 554 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 MACROD2A1Z1Q3 448 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 KIF28PB7ZC32 967 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 CCDC188H7C350 402 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 SEC24DO94855 1032 aaPredicted RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 AGTP01019 485 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 CCNB1P14635 433 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 CPA3P15088 417 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 ZNF24P17028 368 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 ATP5DP30049 168 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 VHLP40337 213 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 MATR3P43243 847 aaKnown RBP eCLIP5.74□□□□□ -1.49
CLK1-202ENST00000409403 KCNQ1P51787 676 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 RAD23BP54727 409 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 MAGOHP61326 146 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 TAF7Q15545 349 aaPredicted RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 UAP1L1Q3KQV9 507 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 SPDYAQ5MJ70 313 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 IFIT1BQ5T764 474 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 TMEM200BQ69YZ2 307 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 KRT40Q6A162 431 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 OR52E8Q6IFG1 317 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 ASRGL1Q7L266 308 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 RALYLQ86SE5 291 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 PIGOQ8TEQ8 1089 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 TAF4BQ92750 862 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 INPP5DQ92835 1189 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 AZIN2Q96A70 460 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 MAGOHBQ96A72 148 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 COA7Q96BR5 231 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 PGM2Q96G03 612 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 CATSPER2Q96P56 530 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 RPS6KC1Q96S38 1066 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 CHP1Q99653 195 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 TCHPQ9BT92 498 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 LRRC2Q9BYS8 371 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 ATP8A2Q9NTI2 1148 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 RBM12Q9NTZ6 932 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 INTS9Q9NV88 658 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 TBCCD1Q9NVR7 557 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.74□□□□□ -1.49
CLK1-202ENST00000409403 C9orf78Q9NZ63 289 aaPredicted RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 SAE1Q9UBE0 346 aaPredicted RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 Q9UFV3 132 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 SAP30BPQ9UHR5 308 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 SH3GLB1Q9Y371 365 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 IRAK3Q9Y616 596 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 NFS1Q9Y697 457 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 UBR2Q8IWV8 1755 aa5.74□□□□□ -1.49
CLK1-202ENST00000409403 MYO5AQ9Y4I1 1855 aaKnown RBP5.74□□□□□ -1.49
CLK1-202ENST00000409403 MAP1BP46821 2468 aaKnown RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 TMEM221A6NGB7 291 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 YDJCA8MPS7 323 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 BTBD19C9JJ37 291 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 NVLO15381 856 aaKnown RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 PJA2O43164 708 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 SNX3O60493 162 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 ZNF189O75820 626 aaPredicted RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 LCA5LO95447 670 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 PLA2G1BP04054 148 aaKnown RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 MYBP10242 640 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 CYP19A1P11511 503 aaPredicted RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 COL6A1P12109 1028 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 TRIM21P19474 475 aaKnown RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 HNRNPH3P31942 346 aaKnown RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 MLLT6P55198 1093 aaPredicted RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 ANTXR2P58335 489 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 TFF2Q03403 129 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 TEFQ10587 303 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 CBX3Q13185 183 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 MPP3Q13368 585 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 TRMT10BQ6PF06 316 aaKnown RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 LMBR1LQ6UX01 489 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 BTNL9Q6UXG8 535 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 STOX1Q6ZVD7 989 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 UNC13DQ70J99 1090 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 ZNF554Q86TJ5 538 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 DGKHQ86XP1 1220 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 KRTAP19-1Q8IUB9 90 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 TMEFF1Q8IYR6 380 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 IFNL2Q8IZJ0 200 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 BCL6BQ8N143 479 aaPredicted RBP5.73□□□□□ -1.49
CLK1-202ENST00000409403 KBTBD3Q8NAB2 608 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 KLHDC4Q8TBB5 520 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 FNIP1Q8TF40 1166 aa5.73□□□□□ -1.49
CLK1-202ENST00000409403 UBLCP1Q8WVY7 318 aaPredicted RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms