RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 RPS12P25398 132 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CRABP2P29373 138 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CAP2P40123 477 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC16A1P53985 500 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 IL5RAQ01344 420 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 PWP1Q13610 501 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 TRIQKQ629K1 86 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 KYAT3Q6YP21 454 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM43BQ6ZT52 329 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ACER1Q8TDN7 264 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 TATDN2Q93075 761 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 RNPEPL1Q9HAU8 725 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 VTA1Q9NP79 307 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 KCNK4Q9NYG8 393 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 STARD13Q9Y3M8 1113 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CPS1P31327 1500 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 TRDMT1O14717 391 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 MRASO14807 208 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF862O60290 1169 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CPT1AP50416 773 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CLCN3P51790 818 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CDC16Q13042 620 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ERMARDQ5T6L9 678 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 RIPOR1Q6ZS17 1223 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 GJD4Q96KN9 370 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 CPNE1Q99829 537 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 DMAP1Q9NPF5 467 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 KLK14Q9P0G3 267 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 ANKRD6Q9Y2G4 727 aa10.49□□□□□ -0.73
LIMCH1-203ENST00000396595 C15orf38-AP3S2A0A0A6YYH1 394 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 PIPSLA2A3N6 862 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 MGAT4DA6NG13 374 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CYB561D2O14569 222 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CBX6O95503 412 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ASS1P00966 412 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CCNCP24863 283 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 PSMB9P28065 219 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CHI3L1P36222 383 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CAPZA2P47755 286 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 NPY2RP49146 381 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 OXCT1P55809 520 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ROR2Q01974 943 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ST3GAL1Q11201 340 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 FASTKQ14296 549 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TAB1Q15750 504 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 RGS21Q2M5E4 152 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 STYK1Q6J9G0 422 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ARPINQ7Z6K5 226 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TRIM74Q86UV6 250 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TRIM73Q86UV7 250 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 DNAAF5Q86Y56 855 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ZDHHC17Q8IUH5 632 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 MREGQ8N565 214 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CCDC33Q8N5R6 958 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ETNPPLQ8TBG4 499 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CKAP2Q8WWK9 683 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 DLG3Q92796 817 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SKA1Q96BD8 255 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CAMKK2Q96RR4 588 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 UBXN6Q9BZV1 441 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 HPS4Q9NQG7 708 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 RRN3Q9NYV6 651 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 NDUFAF1Q9Y375 327 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 STON1Q9Y6Q2 735 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 NRXN1Q9ULB1 1477 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 LMTK2Q8IWU2 1503 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 A0A087WXM4 84 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 B3GAT3O94766 335 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ZBTB7AO95365 584 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ATF4P18848 351 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 NR2C2P49116 596 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ITPK1Q13572 414 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 NFIL3Q16649 462 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SAMD4BQ5PRF9 694 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TCHHL1Q5QJ38 904 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 MFSD7Q6UXD7 560 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 NEK10Q6ZWH5 1172 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 BNIPLQ7Z465 357 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SETD9Q8NE22 299 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 AGBL3Q8NEM8 1001 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SPIRE2Q8WWL2 714 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 DEFB129Q9H1M3 183 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 DNAJC18Q9H819 358 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 AGO4Q9HCK5 861 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CACNA2D2Q9NY47 1150 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CYP39A1Q9NYL5 469 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 KLHL3Q9UH77 587 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SORCS3Q9UPU3 1222 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SH3GLB1Q9Y371 365 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ACTL7BQ9Y614 415 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 E9PCH4 1651 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 A0A096LPK6 155 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM114B3SHH9 223 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SNX3O60493 162 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 MED26O95402 600 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 AKAP5P24588 427 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 DNAJB2P25686 324 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 POU1F1P28069 291 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 GPC1P35052 558 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms