RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 PGLYRP2Q96PD5 576 aa20.1■□□□□ 0.81
SHROOM1-202ENST00000378676 EBF4Q9BQW3 602 aa20.1■□□□□ 0.81
SHROOM1-202ENST00000378676 WWP1Q9H0M0 922 aa20.1■□□□□ 0.81
SHROOM1-202ENST00000378676 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.1■□□□□ 0.812e-6■■■□□ 16.1
SHROOM1-202ENST00000378676 IL1RAPL1Q9NZN1 696 aa20.1■□□□□ 0.81
SHROOM1-202ENST00000378676 MORF4L1Q9UBU8 362 aa20.1■□□□□ 0.81
SHROOM1-202ENST00000378676 UBQLN1Q9UMX0 589 aaKnown RBP20.1■□□□□ 0.81
SHROOM1-202ENST00000378676 SYNJ2BP-COX16A0A087WUM0 186 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 KPNA7A9QM74 516 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 TPP1O14773 563 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 BIRC5O15392 142 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 LYPLA1O75608 230 aaPredicted RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 TOMM70O94826 608 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 HOXD8P13378 290 aaPredicted RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 FDFT1P37268 417 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 MATKP42679 507 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 RPL10AP62906 217 aaKnown RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 IRX1P78414 480 aaPredicted RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 SOX4Q06945 474 aaPredicted RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 ADIGQ0VDE8 80 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 BLMHQ13867 455 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 PACS1Q6VY07 963 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 OSTM1Q86WC4 334 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 RAB3IL1Q8TBN0 382 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 XPNPEP3Q9NQH7 507 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 COX16Q9P0S2 106 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 HACD1B0YJ81 288 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 B2RBV5 119 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 PSMB4P28070 264 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 AP1B1Q10567 949 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 STX3Q13277 289 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 SNAPC2Q13487 334 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 RCN2Q14257 317 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 FASTKD1Q53R41 847 aaKnown RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 BSPRYQ5W0U4 402 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 LRRC8BQ6P9F7 803 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 TP53INP2Q8IXH6 220 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 NRG4Q8WWG1 115 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 FAM149B1Q96BN6 582 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 P2RY11Q96G91 374 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 RNF39Q9H2S5 420 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 SNX25Q9H3E2 840 aa20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 MMADHCQ9H3L0 296 aaPredicted RBP20.09■□□□□ 0.81
SHROOM1-202ENST00000378676 SMIM28A0A1B0GU29 152 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 ITM2AO43736 263 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 SKAP2O75563 359 aaPredicted RBP20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 SMNDC1O75940 238 aaKnown RBP eCLIP20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 NEBLO76041 1014 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 PSMG1O95456 288 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 ATP6V1C1P21283 382 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 PAX7P23759 505 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 PGM1P36871 562 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 GMPRP36959 345 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 ALDH18A1P54886 795 aaKnown RBP20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 DUSP28Q4G0W2 176 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 MBLAC2Q68D91 279 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 PIGZQ86VD9 579 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 SMC1BQ8NDV3 1235 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 NMRK1Q9NWW6 199 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 SYBUQ9NX95 663 aa20.08■□□□□ 0.81
SHROOM1-202ENST00000378676 MLNP12872 115 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 ACADSBP45954 432 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 SARNPP82979 210 aaKnown RBP20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 OLIG2Q13516 323 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 PDE1CQ14123 709 aaPredicted RBP20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 SLC25A52Q3SY17 297 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 N4BP2L1Q5TBK1 243 aaPredicted RBP20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 RBM15BQ8NDT2 890 aaKnown RBP20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 RNF139Q8WU17 664 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 TMEM40Q8WWA1 233 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 CCDC106Q9BWC9 280 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 SEPT10Q9P0V9 454 aa20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.08■□□□□ 0.8
SHROOM1-202ENST00000378676 SDR42E2A6NKP2 422 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CLDN5O00501 218 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 DAB1O75553 588 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 BEST1O76090 585 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 FGF3P11487 239 aaPredicted RBP20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CNTFP26441 200 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CCNA1P78396 465 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 UBAP2LQ14157 1087 aaKnown RBP20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 HIC1Q14526 733 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 DGKDQ16760 1214 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 ATG14Q6ZNE5 492 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CYS1Q717R9 158 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 HSFY1Q96LI6 401 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 XPO1O14980 1071 aaKnown RBP20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 LUC7L3O95232 432 aaKnown RBP20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 PRKCGP05129 697 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 DARSP14868 501 aaKnown RBP20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 KDSRQ06136 332 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CDK18Q07002 472 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 WASHC5Q12768 1159 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CCDC6Q16204 474 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 GPR162Q16538 588 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 DCAF6Q58WW2 860 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 EFHC1Q5JVL4 640 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 ANO7Q6IWH7 933 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 CES3Q6UWW8 571 aa20.07■□□□□ 0.8
SHROOM1-202ENST00000378676 KYAT3Q6YP21 454 aaKnown RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms