RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 FNDC5Q8NAU1 212 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 BCLAF3A2AJT9 711 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 LSM8O95777 96 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 PDHBP11177 359 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 DNAJC1Q96KC8 554 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 TMEM120AQ9BXJ8 343 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 GPAMQ9HCL2 828 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 CD248Q9HCU0 757 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 RIMS1Q86UR5 1692 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 C1orf232A0A0U1RR37 186 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 CYP27B1O15528 508 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 FGFR1P11362 822 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 CHPFQ8IZ52 775 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 NUP205Q92621 2012 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 LTN1O94822 1766 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF609O15014 1411 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 CCL15-CCL14A0A0B4J2E2 113 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ALOX12P18054 663 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 CCL15Q16663 113 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 LRRC74BQ6ZQY2 392 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 MTDHQ86UE4 582 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 SLC13A5Q86YT5 568 aaPredicted RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ANKS1AQ92625 1134 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 SLC9A7Q96T83 725 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 NOL6Q9H6R4 1146 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF304Q9HCX3 659 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 TCF7L2Q9NQB0 619 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 DCDC2CA8MYV0 355 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 FAM58BPP0C7Q3 252 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 RNF44Q7L0R7 432 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 SIRT2Q8IXJ6 389 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 DEFB107AQ8IZN7 70 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 TNFAIP8O95379 198 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ZFP1Q6P2D0 407 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ULK2Q8IYT8 1036 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 GLT1D1Q96MS3 346 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ADPRHL2Q9NX46 363 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 GUCY1B2O75343 617 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 HNRNPH1P31943 449 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 RHOAP61586 193 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 EPC2Q52LR7 807 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ANGEL2Q5VTE6 544 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 KLHDC7AQ5VTJ3 777 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 TRAPPC9Q96Q05 1148 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 RXFP1Q9HBX9 757 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 MAGEB16A2A368 324 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 UBDO15205 165 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 CCNT2O60583 730 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 KCNMA1Q12791 1236 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 SCARF1Q14162 830 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 MYBPC2Q14324 1141 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 PDPK2PQ6A1A2 396 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 KDM7AQ6ZMT4 941 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 TRMT2AQ8IZ69 625 aaKnown RBP12.75□□□□□ -0.37
VPS13A-204ENST00000376634 FICDQ9BVA6 458 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 LRRC4BQ9NT99 713 aa12.75□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF318Q5VUA4 2279 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 CD3EAPO15446 510 aaKnown RBP12.74□□□□□ -0.37
VPS13A-204ENST00000376634 HS6ST1O60243 411 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 TBCELQ5QJ74 424 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 FAXCQ5TGI0 409 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 PAFAH2Q99487 392 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 MXRA8Q9BRK3 442 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 BTBD7Q9P203 1132 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 KATNA1O75449 491 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 PTSQ03393 145 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 BIKQ13323 160 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 SEPHS2Q99611 448 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 VCPKMTQ9H867 229 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 TCF7P36402 384 aaPredicted RBP12.74□□□□□ -0.37
VPS13A-204ENST00000376634 GTF2A2P52657 109 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 RIPOR1Q6ZS17 1223 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 VTI1BQ9UEU0 232 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 PRR12Q9ULL5 1215 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 TPRKBQ9Y3C4 175 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 TSPAN9O75954 239 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 SLC1A6P48664 564 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 LHX1P48742 406 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 FXR2P51116 673 aaKnown RBP eCLIP12.74□□□□□ -0.372e-6■■■□□ 17.6
VPS13A-204ENST00000376634 GLRA4Q5JXX5 417 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 ACOT1Q86TX2 421 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 ZCCHC7Q8N3Z6 543 aaKnown RBP12.74□□□□□ -0.37
VPS13A-204ENST00000376634 OR52L1Q8NGH7 329 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 SSNA1O43805 119 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 EPN2O95208 641 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 C2CD6Q53TS8 623 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 EPHA10Q5JZY3 1008 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 C1orf50Q9BV19 199 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 CIPCQ9C0C6 399 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 AKAP7Q9P0M2 348 aaPredicted RBP12.74□□□□□ -0.37
VPS13A-204ENST00000376634 KIAA1257Q9ULG3 409 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 LYVE1Q9Y5Y7 322 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 USP32Q8NFA0 1604 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 THP07101 528 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 NEDD8Q15843 81 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 DGUOKQ16854 277 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 TCHHL1Q5QJ38 904 aaPredicted RBP12.74□□□□□ -0.37
VPS13A-204ENST00000376634 TRMT11Q7Z4G4 463 aaKnown RBP12.74□□□□□ -0.37
VPS13A-204ENST00000376634 SKA1Q96BD8 255 aa12.74□□□□□ -0.37
VPS13A-204ENST00000376634 NSUN4Q96CB9 384 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms