RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 HIST2H2AA3Q6FI13 130 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 MED8Q96G25 268 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 GIMAP4Q9NUV9 329 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 A0A0G2JLL6 359 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 EPHB6O15197 1021 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 GABRR2P28476 465 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 PPM1AP35813 382 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ARSHQ5FYA8 562 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 PRRT2Q7Z6L0 340 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 MTBPQ96DY7 904 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 HES6Q96HZ4 224 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 PAFAH2Q99487 392 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 TSEN34Q9BSV6 310 aaKnown RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 TKTL2Q9H0I9 626 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ABCG4Q9H172 646 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 NPHS2Q9NP85 383 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ACOT9Q9Y305 439 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 APOC4-APOC2K7ER74 178 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 H2AFYO75367 372 aaKnown RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 APOC2P02655 101 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 CAPZA2P47755 286 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 DMTNQ08495 405 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SNAP47Q5SQN1 464 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 IFNEQ86WN2 208 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 FAM111AQ96PZ2 611 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 VAT1Q99536 393 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 NOP53Q9NZM5 478 aaKnown RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 AKAP7Q9P0M2 348 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 COL20A1Q9P218 1284 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 PCNAP12004 261 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SELPP16109 830 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ANKRD52Q8NB46 1076 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SMG7Q92540 1137 aaKnown RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 MAML3Q96JK9 1138 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 TM6SF2Q9BZW4 377 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 EPN3Q9H201 632 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 GANQ9H2C0 597 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ZFYVE1Q9HBF4 777 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 RBAK-RBAKDNI3L0D1 243 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 EIF3HO15372 352 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SH3BGRLO75368 114 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SUPT7LO94864 414 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 TPH1P17752 444 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 TOMM20Q15388 145 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 DCLRE1AQ6PJP8 1040 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 TMEM161AQ9NX61 479 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 RBPJLQ9UBG7 517 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ZNF214Q9UL59 606 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 IGLV3-22A0A075B6J6 115 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SOWAHBA6NEL2 793 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 CSH1P0DML2 217 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 CSH2P0DML3 217 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 BLVRAP53004 296 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 MPP3Q13368 585 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 PPIGQ13427 754 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ALKBH2Q6NS38 261 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ARID3BQ8IVW6 561 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 B3GALNT2Q8NCR0 500 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 CLEC4DQ8WXI8 215 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 MANSC1Q9H8J5 431 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 SYTL2Q9HCH5 934 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 RARAP10276 462 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 MSH3P20585 1137 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 CHI3L2Q15782 390 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 LRRC8EQ6NSJ5 796 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 KCNT2Q6UVM3 1135 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 ZNF557Q8N988 423 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 LENG9Q96B70 501 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 PRKD2Q9BZL6 878 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 NXF3Q9H4D5 531 aaKnown RBP11.88□□□□□ -0.51
SYNE1-204ENST00000367248 GOLGA2P5Q9HBQ8 144 aa11.88□□□□□ -0.51
SYNE1-204ENST00000367248 OR4Q2P0C623 313 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 SERPINB8P50452 374 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 HECTD3Q5T447 861 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 LRRC38Q5VT99 294 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 RAP1GAP2Q684P5 730 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 LRRC8DQ7L1W4 858 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 FAM84AQ96KN4 292 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.87□□□□□ -0.51
SYNE1-204ENST00000367248 ECT2Q9H8V3 914 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 THEGQ9P2T0 379 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 LNPEPQ9UIQ6 1025 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 CA12O43570 354 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 GLP2RO95838 553 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 GUCA1CO95843 209 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 HPCAP84074 193 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 PREPLQ4J6C6 727 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-204ENST00000367248 ATRNL1Q5VV63 1379 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 IFNL1Q8IU54 200 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 MYO1HQ8N1T3 1032 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 TSPAN18Q96SJ8 248 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 NIFKQ9BYG3 293 aaKnown RBP11.87□□□□□ -0.51
SYNE1-204ENST00000367248 PSD3Q9NYI0 1048 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 SMIM28A0A1B0GU29 152 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 DNALI1O14645 258 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-204ENST00000367248 CYP7B1O75881 506 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 NLRP9Q7RTR0 991 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 DSG4Q86SJ6 1040 aa11.87□□□□□ -0.51
SYNE1-204ENST00000367248 EPS8L3Q8TE67 593 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms