RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 NPC1O15118 1278 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 DFNA5O60443 496 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 TBCAO75347 108 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 KRT18P05783 430 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 CDK4P11802 303 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 MYF5P13349 255 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 CCDC130P13994 396 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 CKMT2P17540 419 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 ITGB6P18564 788 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 ABCB4P21439 1286 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 BCAT1P54687 386 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 GALCP54803 685 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 C21orf59P57076 290 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 RACK1P63244 317 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 GABREP78334 506 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 GNL2Q13823 731 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 L1TD1Q5T7N2 865 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 CDCP2Q5VXM1 449 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 KIAA0895LQ68EN5 471 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 INO80CQ6PI98 192 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 SERPINA13PQ6UXR4 307 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 DYMQ7RTS9 669 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 TRAPPC11Q7Z392 1133 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 ANKS1BQ7Z6G8 1248 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 ADAT2Q7Z6V5 191 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 SCD5Q86SK9 330 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 NOC3LQ8WTT2 800 aaKnown RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 KCNE4Q8WWG9 221 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 VCPIP1Q96JH7 1222 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 ZNF578Q96N58 590 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 ACE2Q9BYF1 805 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 CIPCQ9C0C6 399 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 NACA2Q9H009 215 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 BTBD1Q9H0C5 482 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 SDCBP2Q9H190 292 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 XYLT2Q9H1B5 865 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 SMYD3Q9H7B4 428 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 CYLDQ9NQC7 956 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 PRSS16Q9NQE7 514 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 KRT82Q9NSB4 513 aa8.92□□□□□ -0.98
HMGB1P39-201ENST00000366304 A0A1W2PQH9 124 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 FAM47DPA6NHR8 397 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 SIGLEC6O43699 453 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 SDC3O75056 442 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 AP1G2O75843 785 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 NTRK1P04629 796 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 GARTP22102 1010 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 ACP1P24666 158 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 HOXD13P35453 343 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 UCNP55089 124 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 NXPH1P58417 271 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 SKOR1P84550 965 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 ILKQ13418 452 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 WDR72Q3MJ13 1102 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 BROXQ5VW32 411 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 HIST2H2BCQ6DN03 193 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 NCEH1Q6PIU2 408 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 PRR7Q8TB68 274 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 HVCN1Q96D96 273 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 DNAJC19Q96DA6 116 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 ANKRD36BP1Q96IX9 119 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 KDM4CQ9H3R0 1056 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 DMAP1Q9NPF5 467 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 HMGXB4Q9UGU5 601 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 ADAMTS1Q9UHI8 967 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 LSM7Q9UK45 103 aaKnown RBP8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 AGO1Q9UL18 857 aaKnown RBP8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 TP53BP1Q12888 1972 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 AHCTF1Q8WYP5 2266 aa8.91□□□□□ -0.98
HMGB1P39-201ENST00000366304 A8MXQ7 604 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 CASC3O15234 703 aaKnown RBP8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 SUV39H1O43463 412 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 USP12O75317 370 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 HMBSP08397 361 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 GIMD1P0DJR0 217 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 GP1BBP13224 206 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 RARGP13631 454 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 HLA-FP30511 346 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 ATP5C1P36542 298 aaKnown RBP8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 RXRGP48443 463 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 LSSP48449 732 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 NEK4P51957 841 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 MAP3K7CLP57077 242 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 ANAPC15P60006 121 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 MYL6P60660 151 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 EHHADHQ08426 723 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 DUOXA2Q1HG44 320 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 ADIPOR2Q86V24 386 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 SLC25A45Q8N413 288 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 JAKMIP2Q96AA8 810 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 SMARCD1Q96GM5 515 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 PRR11Q96HE9 360 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 ACCSQ96QU6 501 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 MRPL44Q9H9J2 332 aaKnown RBP8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 SGK2Q9HBY8 427 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 CSNK1G1Q9HCP0 422 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 IGSF5Q9NSI5 407 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 STARD5Q9NSY2 213 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms