RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 MRPS7Q9Y2R9 242 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 PHF2O75151 1096 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RBL1P28749 1068 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CYP4F8P98187 520 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TRIP4Q15650 581 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 PKN1Q16512 942 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RARS2Q5T160 578 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 E4F1Q66K89 784 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 BRD9Q9H8M2 597 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RFX7Q2KHR2 1363 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 GPR75-ASB3A0A0A6YYF3 556 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 BTN3A1O00481 513 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 KDM1AO60341 852 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RASGRP1O95267 797 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 GIT2Q14161 759 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 SLC44A4Q53GD3 710 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 C12orf50Q8NA57 414 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 PRKAR2AP13861 404 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CBX2Q14781 532 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ZC3H7AQ8IWR0 971 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 IQCF2Q8IXL9 164 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 OR8H2Q8N162 312 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 FIBCD1Q8N539 461 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 GRID1Q9ULK0 1009 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CRB1P82279 1406 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 MIF4GDA9UHW6 222 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 HMGB1P1B2RPK0 211 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 MAGP20916 626 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 EXOSC10Q01780 885 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TRIP10Q15642 601 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RFWD3Q6PCD5 774 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 KCNK18Q7Z418 384 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 PROM2Q8N271 834 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 POU5F2Q8N7G0 328 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 FNDC5Q8NAU1 212 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CXorf40AQ8TE69 158 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 HBEGFQ99075 208 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 PALMDQ9NP74 551 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TIE1P35590 1138 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 HERC6Q8IVU3 1022 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 IZUMO1Q8IYV9 350 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ADSSL1Q8N142 457 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 NOA1Q8NC60 698 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TRNT1Q96Q11 434 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 KCNF1Q9H3M0 494 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CTPS2Q9NRF8 586 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ARIH1Q9Y4X5 557 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RAMP2O60895 175 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TYMPP19971 482 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 PTNP21246 168 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RNF144AP50876 292 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TGFB2P61812 414 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 IL5RAQ01344 420 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 NAPEPLDQ6IQ20 393 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TRIM65Q6PJ69 517 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 REXO1L1PQ8IX06 675 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 NAT14Q8WUY8 206 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 MANSC1Q9H8J5 431 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 NMUR1Q9HB89 426 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CD248Q9HCU0 757 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ARHGEF3Q9NR81 526 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 LRRC4BQ9NT99 713 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TMLHEQ9NVH6 421 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ADAMTS12P58397 1594 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CFAP99D6REC4 459 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 H3BN98 237 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 PSMD9O00233 223 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 ACADSBP45954 432 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 OR14C36Q8NHC7 312 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 FBXO30Q8TB52 745 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 UBE2OQ9C0C9 1292 aaKnown RBP7.52□□□□□ -1.2
VPS13A-202ENST00000357409 MYLK2Q9H1R3 596 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 IMPAD1Q9NX62 359 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 EFR3BQ9Y2G0 817 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 SIK3Q9Y2K2 1263 aa7.52□□□□□ -1.2
VPS13A-202ENST00000357409 SAC3D1A6NKF1 404 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TAF13Q15543 124 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 AGKQ53H12 422 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF280DQ6N043 979 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 POTEAQ6S8J7 498 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ANO5Q75V66 913 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 DOK4Q8TEW6 326 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 MTMR8Q96EF0 704 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 STAMBPL1Q96FJ0 436 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CCT7Q99832 543 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 SNX13Q9Y5W8 968 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 FAM25AB3EWG3 89 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 FAM25CB3EWG5 89 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 FAM25GB3EWG6 89 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TBC1D4O60343 1298 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TPST2O60704 377 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 EFCAB14O75071 495 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 OR1D2P34982 312 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 SARSP49591 514 aaKnown RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ZIK1Q3SY52 487 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GPR158Q5T848 1215 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 RGMBQ6NW40 437 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 KLHL23Q8NBE8 558 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GRAMD1AQ96CP6 724 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 EVLQ9UI08 416 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms