RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NR6A1Q15406 480 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 TRIP4Q15650 581 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 SPANXN2Q5MJ10 180 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 PRMT9Q6P2P2 845 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 ULK2Q8IYT8 1036 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 EFCAB3Q8N7B9 438 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 SHPRHQ149N8 1683 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM20BO75063 409 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 ABHD2P08910 425 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 POU6F1Q14863 301 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 ZBTB46Q86UZ6 589 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 TMEM176AQ96HP8 235 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 RMND5AQ9H871 391 aa19.99■□□□□ 0.79
CCDC88B-202ENST00000356786 APOC4-APOC2K7ER74 178 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 APOC2P02655 101 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 ACER1Q8TDN7 264 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 DRG1Q9Y295 367 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 HBP1O60381 514 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 CASP5P51878 434 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 PERM1Q5SV97 790 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 C19orf18Q8NEA5 215 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 ATG4CQ96DT6 458 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 FICDQ9BVA6 458 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 AGPSO00116 658 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 SLITRK3O94933 977 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 CD151P48509 253 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 RARRES1P49788 294 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 TAF6P49848 677 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 KCNMB4Q86W47 210 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 SVOPQ8N4V2 548 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 DGCR14Q96DF8 476 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 FARP1Q9Y4F1 1045 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 RAD54BQ9Y620 910 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 HS6ST1O60243 411 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 PRKAA2P54646 552 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 SOX10P56693 466 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 WASHC5Q12768 1159 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 DGCR6Q14129 220 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 ZDHHC13Q8IUH4 622 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM151AQ8WW52 585 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 ALG3Q92685 438 aa19.98■□□□□ 0.79
CCDC88B-202ENST00000356786 NWD1Q149M9 1564 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 DPPA5A6NC42 116 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 ATG7O95352 703 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 PGAM1P18669 254 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 CDC42EP1Q00587 391 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 BLMHQ13867 455 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 NCF4Q15080 339 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 INAQ16352 499 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 ADCK2Q7Z695 626 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 C4orf19Q8IY42 314 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 UTP15Q8TED0 518 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 HTR3CQ8WXA8 447 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 POLR1BQ9H9Y6 1135 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 MAGEB16A2A368 324 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 NAGLUP54802 743 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 FOLH1Q04609 750 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 ANGPT1Q15389 498 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 TRABD2AQ86V40 505 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 IRF2BP1Q8IU81 584 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 SYTL1Q8IYJ3 562 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 SPATA20Q8TB22 786 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 SMAD5Q99717 465 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 LIMD1Q9UGP4 676 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 TPRKBQ9Y3C4 175 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 PNMA8CA0A1B0GUJ8 204 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 MYL4P12829 197 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 RBL1P28749 1068 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 PLK1P53350 603 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 BNIP1Q12981 228 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 C3orf67Q6ZVT6 689 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 WDR49Q8IV35 697 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 EID3Q8N140 333 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 LRRC39Q96DD0 335 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 MRPS26Q9BYN8 205 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 MUC3BQ9H195 1237 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 SYTL2Q9HCH5 934 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 GALNT8Q9NY28 637 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 KDM4FA0A1W2PPD8 638 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 KCNK1O00180 336 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 LGR5O75473 907 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 ICAM1P05362 532 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 MIPP30301 263 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 SERPINH1P50454 418 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 RPL14P50914 215 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 PPP3CAQ08209 521 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 NFIAQ12857 509 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 NR1D2Q14995 579 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 PTAR1Q7Z6K3 402 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 MAGEE2Q8TD90 523 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 TBCBQ99426 244 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 CPNE1Q99829 537 aa19.97■□□□□ 0.79
CCDC88B-202ENST00000356786 A0A0B4J269 797 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 DCDC2CA8MYV0 355 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 VEGFAP15692 232 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 GSSP48637 474 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 UGT3A1Q6NUS8 523 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 SLC44A2Q8IWA5 706 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 GIPC3Q8TF64 312 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms