RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ILKAPQ9H0C8 392 aaPredicted RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 PDZD7Q9H5P4 517 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 SPG21Q9NZD8 308 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 PCDHGC5Q9Y5F6 944 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 TRAV19A0A0A6YYK7 116 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 KLHL2O95198 593 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 MMP13P45452 471 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 TBL1YQ9BQ87 522 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 SNRNP25Q9BV90 132 aaKnown RBP15.28■□□□□ 0.04
COL17A1-201ENST00000353479 OSGEPL1Q9H4B0 414 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 ACOT9Q9Y305 439 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 DERAQ9Y315 318 aa15.28■□□□□ 0.04
COL17A1-201ENST00000353479 LRRC37A3O60309 1634 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.27■□□□□ 0.04
COL17A1-201ENST00000353479 CFAP73A6NFT4 308 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 C5orf58C9J3I9 102 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 MYO1CO00159 1063 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ZNF862O60290 1169 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 TSPAN1O60635 241 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 IFNL1Q8IU54 200 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 HDAC7Q8WUI4 952 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ZFP42Q96MM3 310 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 HTATIP2Q9BUP3 242 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ARHGAP28Q9P2N2 729 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 NID2Q14112 1375 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 TOMM70O94826 608 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ADH1AP07327 375 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 CSH1P0DML2 217 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 CSH2P0DML3 217 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ITGB6P18564 788 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 CREMQ03060 361 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 FNDC3BQ53EP0 1204 aaKnown RBP15.27■□□□□ 0.04
COL17A1-201ENST00000353479 FAM35AQ86V20 835 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 PHF13Q86YI8 300 aaPredicted RBP15.27■□□□□ 0.04
COL17A1-201ENST00000353479 DENND1CQ8IV53 801 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ING2Q9H160 280 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 ANKZF1Q9H8Y5 726 aa15.27■□□□□ 0.04
COL17A1-201ENST00000353479 LOC100653049A0A140TA62 436 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 USP12O75317 370 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 KRT34O76011 436 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 INHAP05111 366 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 IL10P22301 178 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 DAB2IPQ5VWQ8 1189 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 CSGALNACT1Q8TDX6 532 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 IL1RL2Q9HB29 575 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 FAM153AQ9UHL3 310 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 B4GALT4O60513 344 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 VCLP18206 1134 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 PAX3P23760 479 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 CCL14Q16627 93 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 LRRC8DQ7L1W4 858 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 RRM2BQ7LG56 351 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 FUT8Q9BYC5 575 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 TMBIM4Q9HC24 238 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 THEGQ9P2T0 379 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 PTCH2Q9Y6C5 1203 aa15.27■□□□□ 0.03
COL17A1-201ENST00000353479 A8MX80 341 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 MAP3K13O43283 966 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 SERPINB4P48594 390 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 RPL7AP62424 266 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 BCL2L1Q07817 233 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 SLC24A5Q71RS6 500 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 PRPF39Q86UA1 669 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 EIF2AQ9BY44 585 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 COL1A1P02452 1464 aaPredicted RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 CCDC85CA6NKD9 419 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 MGEA5O60502 916 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 H2AFYO75367 372 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 ZSCAN5DPP0CG00 497 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 POLR2EP19388 210 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 ZNF135P52742 658 aaPredicted RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 PCYOX1LQ8NBM8 494 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 SYTL2Q9HCH5 934 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 MRPS23Q9Y3D9 190 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 TRPC5OSA6NMA1 111 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 FGF10O15520 208 aaPredicted RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 CNTFP26441 200 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 IRAK1P51617 712 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 ATXN3P54252 364 aaPredicted RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 KCNK10P57789 538 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 LRRC74AQ0VAA2 488 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 LAYNQ6UX15 382 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 GLT6D1Q7Z4J2 308 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 KCNMB4Q86W47 210 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 DUSP16Q9BY84 665 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 SLC24A2Q9UI40 661 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 OR1D2P34982 312 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 PPM1AP35813 382 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 MAGEA9P43362 315 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 CES5AQ6NT32 575 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 FOXR2Q6PJQ5 311 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 TRIML2Q8N7C3 387 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 TSPAN18Q96SJ8 248 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 UTP6Q9NYH9 597 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 SEPT3Q9UH03 358 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 KPNA3O00505 521 aaPredicted RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 TRDMT1O14717 391 aaKnown RBP15.26■□□□□ 0.03
COL17A1-201ENST00000353479 SPATA31D3P0C874 917 aa15.26■□□□□ 0.03
COL17A1-201ENST00000353479 PGAM1P18669 254 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms