RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CCNYL1Q8N7R7 359 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 PGLYRP2Q96PD5 576 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CIPCQ9C0C6 399 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ZYG11BQ9C0D3 744 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TKTL2Q9H0I9 626 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 BCAS3Q9H6U6 928 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CACYBPQ9HB71 228 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CAPN7Q9Y6W3 813 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TTLL13PA6NNM8 815 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 PIK3R2O00459 728 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 CHUKO15111 745 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TPD52L2O43399 206 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RHOQP17081 205 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 GTF2A1P52655 376 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TAF10Q12962 218 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ZC3H12AQ5D1E8 599 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 LPPQ93052 612 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ZBTB18Q99592 522 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TSSK1BQ9BXA7 367 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 NRDE2Q9H7Z3 1164 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 GPATCH2LQ9NWQ4 482 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 CRLS1Q9UJA2 301 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 NUP98P52948 1817 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 HAS3O00219 553 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RBP1P09455 135 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 UNGP13051 313 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF618Q5T7W0 954 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TRIM67Q6ZTA4 783 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 SUGP1Q8IWZ8 645 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 LRRC57Q8N9N7 239 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 FCRL2Q96LA5 508 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 PCDHB18PQ96TA0 734 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 APOBEC3GQ9HC16 384 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ACTL7BQ9Y614 415 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 NUP188Q5SRE5 1749 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 hCG_1818297A0A087WSY0 165 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TRIM49D1C9J1S8 452 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RNF103O00237 685 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 PAPSS1O43252 624 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 MAP3K7O43318 606 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 SERPINA4P29622 427 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 FUKQ8N0W3 1084 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 CMASQ8NFW8 434 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 BTBD6Q96KE9 485 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 C8orf48Q96LL4 319 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 PTPN18Q99952 460 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TMEM121Q9BTD3 319 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 KCTD5Q9NXV2 234 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 UBA6A0AVT1 1052 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 H3BMM5 538 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TRDMT1O14717 391 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 IGSF6O95976 241 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 GFAPP14136 432 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 PECAM1P16284 738 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 UGT3A1Q6NUS8 523 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ACAD11Q709F0 780 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 BEND5Q7L4P6 421 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 MICALL1Q8N3F8 863 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 KCTD13Q8WZ19 329 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ACDQ96AP0 544 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 CFAP36Q96G28 342 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RAB3IPQ96QF0 476 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 IL22Q9GZX6 179 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 IKZF4Q9H2S9 585 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RETREG1Q9H6L5 497 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 MRPL40Q9NQ50 206 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RAD18Q9NS91 495 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TUBGCP4Q9UGJ1 667 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ACACAQ13085 2346 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 C2CD4BA6NLJ0 364 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 C9IYK1 514 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 QSOX1O00391 747 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 ITGAVP06756 1048 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 AMPD1P23109 780 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 GTF2H3Q13889 308 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TERF2Q15554 542 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 SOWAHAQ2M3V2 549 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TIGD5Q53EQ6 642 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 KIAA0408Q6ZU52 694 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TBC1D19Q8N5T2 526 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 BCO2Q9BYV7 579 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 RABEP2Q9H5N1 569 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 AGO3Q9H9G7 860 aaKnown RBP7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TFR2Q9UP52 801 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TRIM33Q9UPN9 1127 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 CNTN6Q9UQ52 1028 aa7.05□□□□□ -1.28
SF3B1-201ENST00000335508 TRAV19A0A0A6YYK7 116 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 A0A1B0GVM2 712 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TCAF2A6NFQ2 919 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ARL5CA6NH57 179 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CBX4O00257 560 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CSPG5O95196 566 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 USP17L7P0C7H9 530 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 NDUFV1P49821 464 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SULT2A1Q06520 285 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF33AQ06730 810 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TCEAL1Q15170 157 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 MAPRE2Q15555 327 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 FASTKD1Q53R41 847 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms