RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 FANCCQ00597 558 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 TMEM215Q68D42 235 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 TRNP1Q6NT89 227 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 IRF2BP2Q7Z5L9 587 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 WFDC5Q8TCV5 224 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 NT5C3BQ969T7 300 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 PRICKLE1Q96MT3 831 aaPredicted RBP16.42■□□□□ 0.22
CLN3-201ENST00000333496 NPY6RQ99463 290 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 SLC2A11Q9BYW1 496 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 TTYH3Q9C0H2 523 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 DDIT4Q9NX09 232 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 EBF1Q9UH73 591 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 PLXND1Q9Y4D7 1925 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 CKAP5Q14008 2032 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 OTOGLQ3ZCN5 2332 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 RIF1Q5UIP0 2472 aaKnown RBP16.42■□□□□ 0.22
CLN3-201ENST00000333496 MUC22E2RYF6 1773 aaPredicted RBP16.42■□□□□ 0.22
CLN3-201ENST00000333496 DOCK4Q8N1I0 1966 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 ABCA7Q8IZY2 2146 aa16.42■□□□□ 0.22
CLN3-201ENST00000333496 SYNJ2BP-COX16A0A087WUM0 186 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 KCNU1A8MYU2 1149 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 MMP8P22894 467 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 HLA-FP30511 346 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 PTP4A2Q12974 167 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 FAM102AQ5T9C2 384 aaPredicted RBP16.41■□□□□ 0.22
CLN3-201ENST00000333496 MMS22LQ6ZRQ5 1243 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 OLIG1Q8TAK6 271 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 PPP1R9BQ96SB3 815 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 IRX2Q9BZI1 471 aaPredicted RBP16.41■□□□□ 0.22
CLN3-201ENST00000333496 FAM204AQ9H8W3 233 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 RRAGDQ9NQL2 400 aaPredicted RBP16.41■□□□□ 0.22
CLN3-201ENST00000333496 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLN3-201ENST00000333496 COX16Q9P0S2 106 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 TMEM59LQ9UK28 342 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 CEP192Q8TEP8 1941 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 SDK1Q7Z5N4 2213 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 GOLGA8SH3BPF8 625 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 M0QYT0 321 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 TBL1XO60907 577 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 APBB3O95704 486 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 APOEP02649 317 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 GBP1P32455 592 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 CNR2P34972 360 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 FLT3P36888 993 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 WASP42768 502 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 RPS24P62847 133 aaKnown RBP16.41■□□□□ 0.22
CLN3-201ENST00000333496 CENPCQ03188 943 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 MS4A13Q5J8X5 152 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 EOGTQ5NDL2 527 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 MPP7Q5T2T1 576 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 THADAQ6YHU6 1953 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 TRIM72Q6ZMU5 477 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 KIAA0907Q7Z7F0 614 aaPredicted RBP16.41■□□□□ 0.22
CLN3-201ENST00000333496 RASSF3Q86WH2 238 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 TSTD1Q8NFU3 115 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 BTN2A3PQ96KV6 586 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 AGPAT1Q99943 283 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 SYT11Q9BT88 431 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLN3-201ENST00000333496 MYO6Q9UM54 1294 aa16.41■□□□□ 0.22
CLN3-201ENST00000333496 LRRC53A6NM62 1247 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 WASH3PC4AMC7 463 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 AXIN1O15169 862 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 FERP16591 822 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 NTSR1P30989 418 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 CCR1P32246 355 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 PBX1P40424 430 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 DGKEP52429 567 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 TPM4P67936 248 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 NME3Q13232 169 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 CLEC16AQ2KHT3 1053 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 E4F1Q66K89 784 aaPredicted RBP16.4■□□□□ 0.22
CLN3-201ENST00000333496 RAP1GAP2Q684P5 730 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 ANKS1BQ7Z6G8 1248 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 ATP6V0D2Q8N8Y2 350 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 MSANTD4Q8NCY6 345 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 MDGA1Q8NFP4 955 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 PRMT1Q99873 361 aaKnown RBP16.4■□□□□ 0.22
CLN3-201ENST00000333496 DDX50Q9BQ39 737 aaKnown RBP16.4■□□□□ 0.22
CLN3-201ENST00000333496 C11orf70Q9BRQ4 267 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 RBSNQ9H1K0 784 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 CD248Q9HCU0 757 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 PIGVQ9NUD9 493 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 RRN3Q9NYV6 651 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 SMG5Q9UPR3 1016 aaKnown RBP16.4■□□□□ 0.22
CLN3-201ENST00000333496 GPR179Q6PRD1 2367 aa16.4■□□□□ 0.22
CLN3-201ENST00000333496 A0A1W2PQF6 199 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 GOLGA6L19H0YKK7 550 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 TACR2P21452 398 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 UBASH3AP57075 661 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 SIM2Q14190 667 aaPredicted RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 LPAL2Q16609 132 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 ANO7Q6IWH7 933 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 BNIPLQ7Z465 357 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 TRMT11Q7Z4G4 463 aaKnown RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 PHLDB2Q86SQ0 1253 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 CHPFQ8IZ52 775 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 CFAP52Q8N1V2 620 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 HJURPQ8NCD3 748 aaPredicted RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 GAB3Q8WWW8 586 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms