RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PDIK1LQ8N165 341 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 UBE2J2Q8N2K1 259 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 NAXEQ8NCW5 288 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TEKT5Q96M29 485 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 WWP1Q9H0M0 922 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 MROH5Q6ZUA9 1318 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 L7N2F9 121 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PRPSAP2O60256 369 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 CIDEAO60543 219 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 KRT33AO76009 404 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TXNDC12O95881 172 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PPP4CP60510 307 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 UBE3CQ15386 1083 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 NSUN7Q8NE18 718 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 KIF12Q96FN5 646 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 GPATCH1Q9BRR8 931 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM240BA0A1B0GVZ2 78 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 B4E1Z4 1266 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SULT1C4O75897 302 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SEC24BO95487 1268 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 CFBP00751 764 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 DPEP1P16444 411 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TFE3P19532 575 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SP100P23497 879 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 NPTX2P47972 431 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 NT5C2P49902 561 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 NLRP12P59046 1061 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ST5P78524 1137 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 DEFA6Q01524 100 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PTH1RQ03431 593 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PAN2Q504Q3 1202 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 OR6B2Q6IFH4 312 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 LRRC31Q6UY01 552 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PAQR7Q86WK9 346 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 DSELQ8IZU8 1212 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM161BQ8NDZ6 487 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC30A5Q8TAD4 765 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TNFAIP8L1Q8WVP5 186 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SNX27Q96L92 541 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PPP1R2P1Q96PQ5 205 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PNKPQ96T60 521 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 HNRNPABQ99729 332 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ACSL6Q9UKU0 697 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 GRID1Q9ULK0 1009 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PRAMEF33A0A0G2JMD5 474 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 KANTRA0A1W2PQU2 76 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ASB14A6NK59 587 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 C1orf196B1AJZ1 125 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 H3BMM5 538 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 YY2O15391 372 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PRAMEF10O60809 474 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 DNAJB6O75190 326 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SCGB1D1O95968 90 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 MMP3P08254 477 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF17P17021 662 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ITIH2P19823 946 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC26A3P40879 764 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 BYSLQ13895 437 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SNX17Q15036 470 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF827Q17R98 1081 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 MIGA2Q7L4E1 593 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SMIM15Q7Z3B0 74 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 GPD1LQ8N335 351 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SVOPQ8N4V2 548 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 TGFBRAP1Q8WUH2 860 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 RNF38Q9H0F5 515 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 MOV10Q9HCE1 1003 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 RNF112Q9ULX5 631 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 C2CD2Q9Y426 696 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF175Q9Y473 711 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 CASKIN1Q8WXD9 1431 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 KCNJ18B7U540 433 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 H3BN98 237 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 BHLHE40O14503 412 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF208O43345 1280 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF821O75541 412 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PPP2R2AP63151 447 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 MRPS5P82675 430 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 RASGEF1BQ0VAM2 473 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ITGA9Q13797 1035 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SPIDRQ14159 915 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 KCNJ12Q14500 433 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 SCUBE3Q8IX30 993 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 CENPSQ8N2Z9 138 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PCYOX1LQ8NBM8 494 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PROX1Q92786 737 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 ADIPOR1Q96A54 375 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 PTGFRNQ9P2B2 879 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 MEMO1Q9Y316 297 aa7.8□□□□□ -1.16
LIMCH1-201ENST00000313860 GADD45BO75293 160 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 LGR5O75473 907 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 SCAF4O95104 1147 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP2D6P10635 497 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CHRNB1P11230 501 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 AKR1B1P15121 316 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CD79BP40259 229 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CAPZA1P52907 286 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TPI1P60174 286 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TLE2Q04725 743 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ITIH4Q14624 930 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms