RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ALKBH2Q6NS38 261 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 MTDHQ86UE4 582 aaKnown RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 TMEM132CQ8N3T6 1108 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 LRRC4BQ9NT99 713 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 CROTQ9UKG9 612 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 NDUFAF1Q9Y375 327 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 GPC6Q9Y625 555 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ADGRB3O60242 1522 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 SLC12A8A0AV02 714 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 BTN3A3O00478 584 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 RAD51BO15315 384 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 B3GAT3O94766 335 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 CKBP12277 381 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 CCNA2P20248 432 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 GARTP22102 1010 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 RPL10AP62906 217 aaKnown RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 PPIDQ08752 370 aaKnown RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 PDK2Q15119 407 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 PAN2Q504Q3 1202 aaKnown RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 DPF2Q92785 391 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ZCCHC2Q9C0B9 1178 aaKnown RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 BTBD7Q9P203 1132 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ZNF222Q9UK12 451 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 SNX6Q9UNH7 406 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 IGSF1Q8N6C5 1336 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 A0A1B0GTH6 734 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 C17orf102A2RUQ5 167 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ZBTB7AO95365 584 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 PRG2P13727 222 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 MUTP22033 750 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 THPOP40225 353 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 SNRPFP62306 86 aaKnown RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 MPP3Q13368 585 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 SMCO1Q147U7 214 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ILDR2Q71H61 639 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 NANOGNBQ7Z5D8 188 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 COLGALT2Q8IYK4 626 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 SEPT12Q8IYM1 358 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ADSSL1Q8N142 457 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 LPCAT1Q8NF37 534 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 ACTRT2Q8TDY3 377 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 TEKT5Q96M29 485 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 C7orf25Q9BPX7 421 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 PRKD2Q9BZL6 878 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 BHLHE41Q9C0J9 482 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-201ENST00000302528 STARD13Q9Y3M8 1113 aa10.62□□□□□ -0.71
CLIP1-201ENST00000302528 C19orf81C9J6K1 198 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 SCNN1BP51168 640 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 BOP1Q14137 746 aaKnown RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 ALG11Q2TAA5 492 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 GLRA4Q5JXX5 417 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 ACAD10Q6JQN1 1059 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 HPS6Q86YV9 775 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 OR52L1Q8NGH7 329 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 TRAPPC9Q96Q05 1148 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 DDX18Q9NVP1 670 aaKnown RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CRYL1Q9Y2S2 319 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CD3EAPO15446 510 aaKnown RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 KHDRBS3O75525 346 aaKnown RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 RHOBTB3O94955 611 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 HPCAL1P37235 193 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CACNA2D1P54289 1103 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 EPHB3P54753 998 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 SPIRE1Q08AE8 756 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 FCHO2Q0JRZ9 810 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 FAM126BQ8IXS8 530 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CAPSLQ8WWF8 208 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CCSER1Q9C0I3 900 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 LOC100506127A0A0U1RQW1 187 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 FAM25EA8MYX2 175 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 TSPAN9O75954 239 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CLUP10909 449 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 MTAPQ13126 283 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 FAM171BQ6P995 826 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 DNAJC14Q6Y2X3 702 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 ERO1BQ86YB8 467 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 KBTBD2Q8IY47 623 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 PIGBQ92521 554 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 LPAR1Q92633 364 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 PHF21BQ96EK2 531 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 UNKQ9C0B0 810 aaKnown RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 RHBGQ9H310 441 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 MYRFQ9Y2G1 1151 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CHD1O14646 1710 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CHP2O43745 196 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 BGNP21810 368 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 OMPP47874 163 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 DCTN2Q13561 401 aaKnown RBP10.61□□□□□ -0.71
CLIP1-201ENST00000302528 PKN1Q16512 942 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 CTXN3Q4LDR2 81 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 MFSD7Q6UXD7 560 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 REXO1L1PQ8IX06 675 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 PAFAH2Q99487 392 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 MNTQ99583 582 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 TBC1D13Q9NVG8 400 aa10.61□□□□□ -0.71
CLIP1-201ENST00000302528 H7C1W4 665 aa10.6□□□□□ -0.71
CLIP1-201ENST00000302528 TBX3O15119 743 aa10.6□□□□□ -0.71
CLIP1-201ENST00000302528 PGM3O95394 542 aa10.6□□□□□ -0.71
CLIP1-201ENST00000302528 KCNMA1Q12791 1236 aa10.6□□□□□ -0.71
CLIP1-201ENST00000302528 CUL2Q13617 745 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms