RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ELAVL2Q12926 359 aaKnown RBP17.03■□□□□ 0.32
USP4-201ENST00000265560 C10orf120Q5SQS8 335 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 MON1AQ86VX9 555 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 VPS52Q8N1B4 723 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 C8orf48Q96LL4 319 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 GBP1P32455 592 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 DPYSQ14117 519 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 SLMAPQ14BN4 828 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 CCDC38Q502W7 563 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 C14orf80Q86SX3 495 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 TMEM199Q8N511 208 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 ZNF558Q96NG5 402 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 SCML2Q9UQR0 700 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 COL4A6Q14031 1691 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 F9P00740 461 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 MYZAPP0CAP1 466 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 ACTN2P35609 894 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 GRIA1P42261 906 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 MAGEA4P43358 317 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 BBS9Q3SYG4 887 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 ZNF689Q96CS4 500 aaPredicted RBP17.03■□□□□ 0.32
USP4-201ENST00000265560 FCRL2Q96LA5 508 aaPredicted RBP17.03■□□□□ 0.32
USP4-201ENST00000265560 TRIM56Q9BRZ2 755 aaKnown RBP17.03■□□□□ 0.32
USP4-201ENST00000265560 ZBED2Q9BTP6 218 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 TBK1Q9UHD2 729 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 NOVA2Q9UNW9 492 aaKnown RBP17.03■□□□□ 0.32
USP4-201ENST00000265560 HAPLN1P10915 354 aaPredicted RBP17.02■□□□□ 0.32
USP4-201ENST00000265560 STIP1P31948 543 aaKnown RBP17.02■□□□□ 0.32
USP4-201ENST00000265560 IRAK1P51617 712 aa17.02■□□□□ 0.32
USP4-201ENST00000265560 OLIG2Q13516 323 aa17.02■□□□□ 0.32
USP4-201ENST00000265560 SMAD1Q15797 465 aaKnown RBP17.02■□□□□ 0.32
USP4-201ENST00000265560 HEATR6Q6AI08 1181 aaKnown RBP17.02■□□□□ 0.32
USP4-201ENST00000265560 ETNK1Q9HBU6 452 aa17.02■□□□□ 0.32
USP4-201ENST00000265560 H7C4K7 107 aa17.02■□□□□ 0.31
USP4-201ENST00000265560 SLC45A4Q5BKX6 768 aa17.02■□□□□ 0.31
USP4-201ENST00000265560 ARHGAP36Q6ZRI8 547 aa17.02■□□□□ 0.31
USP4-201ENST00000265560 ZCCHC9Q8N567 271 aaKnown RBP17.02■□□□□ 0.31
USP4-201ENST00000265560 ANKLE1Q8NAG6 615 aa17.02■□□□□ 0.31
USP4-201ENST00000265560 PGAP3Q96FM1 320 aaPredicted RBP17.02■□□□□ 0.31
USP4-201ENST00000265560 VANGL2Q9ULK5 521 aa17.02■□□□□ 0.31
USP4-201ENST00000265560 ZMYND8Q9ULU4 1186 aaPredicted RBP17.02■□□□□ 0.31
USP4-201ENST00000265560 FARP1Q9Y4F1 1045 aaPredicted RBP17.02■□□□□ 0.31
USP4-201ENST00000265560 GOLGA6L10A6NI86 522 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 SEMA3BQ13214 749 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 SPPL2BQ8TCT7 592 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 TFB1MQ8WVM0 346 aaKnown RBP17.01■□□□□ 0.31
USP4-201ENST00000265560 P2RY11Q96G91 374 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 FBXO44Q9H4M3 255 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 MTRRQ9UBK8 725 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 KIAA0355O15063 1070 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 DCLK1O15075 740 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 TTC4O95801 387 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 CCR1P32246 355 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 IFI35P80217 286 aaPredicted RBP17.01■□□□□ 0.31
USP4-201ENST00000265560 TFAP2DQ7Z6R9 452 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 PPIL6Q8IXY8 311 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 SLC39A11Q8N1S5 342 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 NAT8LQ8N9F0 302 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 NTAN1Q96AB6 310 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 ZNF512Q96ME7 567 aaPredicted RBP17.01■□□□□ 0.31
USP4-201ENST00000265560 SLC9A7Q96T83 725 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 TMBIM4Q9HC24 238 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 PATJQ8NI35 1801 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 IGLV3-25P01717 112 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 MORF4L2Q15014 288 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 HIF1AQ16665 826 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 IGDCC3Q8IVU1 814 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 COLGALT1Q8NBJ5 622 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 HTR3CQ8WXA8 447 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 SMOC2Q9H3U7 446 aa17.01■□□□□ 0.31
USP4-201ENST00000265560 GREB1Q4ZG55 1949 aa17■□□□□ 0.31
USP4-201ENST00000265560 LCHNA4D1U4 455 aa17■□□□□ 0.31
USP4-201ENST00000265560 SLC38A8A6NNN8 435 aa17■□□□□ 0.31
USP4-201ENST00000265560 SSTR1P30872 391 aa17■□□□□ 0.31
USP4-201ENST00000265560 MAGEA11P43364 429 aa17■□□□□ 0.31
USP4-201ENST00000265560 SLC8B1Q6J4K2 584 aa17■□□□□ 0.31
USP4-201ENST00000265560 CIR1Q86X95 450 aaPredicted RBP17■□□□□ 0.31
USP4-201ENST00000265560 C7orf61Q8IZ16 206 aa17■□□□□ 0.31
USP4-201ENST00000265560 BBOF1Q8ND07 529 aa17■□□□□ 0.31
USP4-201ENST00000265560 CCHCR1Q8TD31 782 aa17■□□□□ 0.31
USP4-201ENST00000265560 USP33Q8TEY7 942 aa17■□□□□ 0.31
USP4-201ENST00000265560 AGAP3Q96P47 875 aa17■□□□□ 0.31
USP4-201ENST00000265560 EPAS1Q99814 870 aa17■□□□□ 0.31
USP4-201ENST00000265560 WDR83Q9BRX9 315 aaKnown RBP17■□□□□ 0.31
USP4-201ENST00000265560 VPS37BQ9H9H4 285 aa17■□□□□ 0.31
USP4-201ENST00000265560 RC3H2Q9HBD1 1191 aaKnown RBP17■□□□□ 0.31
USP4-201ENST00000265560 TTLL3Q9Y4R7 772 aa17■□□□□ 0.31
USP4-201ENST00000265560 BCLAF3A2AJT9 711 aaKnown RBP17■□□□□ 0.31
USP4-201ENST00000265560 DFFAO00273 331 aa17■□□□□ 0.31
USP4-201ENST00000265560 SOD2P04179 222 aa17■□□□□ 0.31
USP4-201ENST00000265560 LMAN1P49257 510 aa17■□□□□ 0.31
USP4-201ENST00000265560 KCNQ1P51787 676 aa17■□□□□ 0.31
USP4-201ENST00000265560 PKN2Q16513 984 aaKnown RBP17■□□□□ 0.31
USP4-201ENST00000265560 ATP6V1G3Q96LB4 118 aa17■□□□□ 0.31
USP4-201ENST00000265560 OLFM3Q96PB7 478 aa17■□□□□ 0.31
USP4-201ENST00000265560 FRMD8P1Q9BZ68 369 aaPredicted RBP17■□□□□ 0.31
USP4-201ENST00000265560 MCOLN1Q9GZU1 580 aa17■□□□□ 0.31
USP4-201ENST00000265560 HS3ST4Q9Y661 456 aa17■□□□□ 0.31
USP4-201ENST00000265560 BPTFQ12830 3046 aa17■□□□□ 0.31
USP4-201ENST00000265560 SLC12A8A0AV02 714 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms