RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 INAQ16352 499 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 SNRNP48Q6IEG0 339 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 NEPROQ6NW34 567 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 ZFP1Q6P2D0 407 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 DCLRE1AQ6PJP8 1040 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 GPR180Q86V85 440 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 CHERPQ8IWX8 916 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 STARD8Q92502 1023 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 ISOC1Q96CN7 298 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 SGF29Q96ES7 293 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 CGREF1Q99674 301 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 GCOM2Q9BZD3 368 aaPredicted RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 ZNF518BQ9C0D4 1074 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 STN1Q9H668 368 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 CAAP1Q9H8G2 361 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 XPNPEP1Q9NQW7 623 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 VPS45Q9NRW7 570 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 UTP6Q9NYH9 597 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 PKD2L1Q9P0L9 805 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 RNF11Q9Y3C5 154 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 SMCHD1A6NHR9 2005 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 CNOT3O75175 753 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 ZMPSTE24O75844 475 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 BPGMP07738 259 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 GPR162Q16538 588 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 WDR78Q5VTH9 848 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 GPR141Q7Z602 305 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 IGDCC3Q8IVU1 814 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 PPP1R14CQ8TAE6 165 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 PIWIL2Q8TC59 973 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 CHPT1Q8WUD6 406 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 EME1Q96AY2 570 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 FAM213AQ9BRX8 229 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 DRC3Q9H069 523 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 XPO7Q9UIA9 1087 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 PACSIN3Q9UKS6 424 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 MYRFQ9Y2G1 1151 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 DNAJC16Q9Y2G8 782 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 TCRBV7S3A2A0A539 114 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 H3BNH8 94 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 PSMD12O00232 456 aaPredicted RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 DGAT1O75907 488 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 KRT37O76014 449 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 LDHAP00338 332 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 SNRPAP09012 282 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 ELK3P41970 407 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 CDKN2BP42772 138 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 TUBA4AP68366 448 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 SPP2Q13103 211 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 CBLBQ13191 982 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 UGCGQ16739 394 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 PDPK2PQ6A1A2 396 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 NANOGP8Q6NSW7 305 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 TMEM214Q6NUQ4 689 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 XRRA1Q6P2D8 792 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 RSPH3Q86UC2 560 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 SLC26A11Q86WA9 606 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 SLC7A5P1Q8MH63 180 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 LILRA2Q8N149 483 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 GRIN3AQ8TCU5 1115 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 C12orf43Q96C57 262 aaKnown RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 WRNIP1Q96S55 665 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 ANLNQ9NQW6 1124 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 SCHIP1Q9P0W5 487 aaPredicted RBP13.49□□□□□ -0.25
NUP54-201ENST00000264883 EPS15L1Q9UBC2 864 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 STK39Q9UEW8 545 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 STYXL1Q9Y6J8 313 aa13.49□□□□□ -0.25
NUP54-201ENST00000264883 KBTBD13C9JR72 458 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 TOM1L1O75674 476 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 TMEM63AO94886 807 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 ASNSP08243 561 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 TNNI1P19237 187 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 NEK2P51955 445 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 ESRRGP62508 458 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 C6orf183Q5T699 404 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 SLFN12LQ6IEE8 588 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 DNAJC24Q6P3W2 148 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 TMEM270Q6UE05 265 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 CTAGE3PQ8IX95 158 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 TRPM4Q8TD43 1214 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 ZNF516Q92618 1163 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 ATP6V0A1Q93050 837 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 ZNF778Q96MU6 729 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 ZMAT2Q96NC0 199 aaKnown RBP13.48□□□□□ -0.25
NUP54-201ENST00000264883 PKP2Q99959 881 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 TPK1Q9H3S4 243 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 GIN1Q9NXP7 522 aa13.48□□□□□ -0.25
NUP54-201ENST00000264883 LYPLA1O75608 230 aaPredicted RBP13.47□□□□□ -0.25
NUP54-201ENST00000264883 ESRRBO95718 433 aa13.47□□□□□ -0.25
NUP54-201ENST00000264883 COX4I1P13073 169 aa13.47□□□□□ -0.25
NUP54-201ENST00000264883 NELFEP18615 380 aaKnown RBP13.47□□□□□ -0.25
NUP54-201ENST00000264883 NCF2P19878 526 aaPredicted RBP13.47□□□□□ -0.25
NUP54-201ENST00000264883 MRPS9P82933 396 aaKnown RBP13.47□□□□□ -0.25
NUP54-201ENST00000264883 KCNC4Q03721 635 aa13.47□□□□□ -0.25
NUP54-201ENST00000264883 FLOT2Q14254 428 aa13.47□□□□□ -0.25
NUP54-201ENST00000264883 ANGEL2Q5VTE6 544 aaKnown RBP13.47□□□□□ -0.25
NUP54-201ENST00000264883 TDRD10Q5VZ19 366 aaKnown RBP13.47□□□□□ -0.25
NUP54-201ENST00000264883 METTL21CQ5VZV1 264 aa13.47□□□□□ -0.25
NUP54-201ENST00000264883 ARCQ7LC44 396 aa13.47□□□□□ -0.25
NUP54-201ENST00000264883 PPM1NQ8N819 430 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms