RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CNTN3Q9P232 1028 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TRPV2Q9Y5S1 764 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 A0A0A0MRY4 1105 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TCRBV7S3A2A0A539 114 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 ODC1P11926 461 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TMED10P49755 219 aaKnown RBP16.76■□□□□ 0.27
CTCF-201ENST00000264010 GBE1Q04446 702 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 CRYBG2Q8N1P7 616 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TMCO5AQ8N6Q1 288 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 PAF1Q8N7H5 531 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SPATA13Q96N96 652 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 FAM210AQ96ND0 272 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TIMM13Q9Y5L4 95 aaPredicted RBP16.76■□□□□ 0.27
CTCF-201ENST00000264010 GYG2O15488 501 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 EDF1O60869 148 aaKnown RBP16.76■□□□□ 0.27
CTCF-201ENST00000264010 GOT1P17174 413 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 CYP3A5P20815 502 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SLC12A2P55011 1212 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 GPX6P59796 221 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 BMPR2Q13873 1038 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 CA9Q16790 459 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SLC25A52Q3SY17 297 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TMEM86AQ8N2M4 240 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 ARFGAP1Q8N6T3 406 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 LRRN4Q8WUT4 740 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SLC44A1Q8WWI5 657 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 GAD1Q99259 594 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 TLK1Q9UKI8 766 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 RNF103O00237 685 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 DAB1O75553 588 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 F2P00734 622 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SAT1P21673 171 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 CNTFP26441 200 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 FOXN2P32314 431 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SLC18A1P54219 525 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 STX3Q13277 289 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 RAPH1Q70E73 1250 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SRPK1Q96SB4 655 aaKnown RBP16.75■□□□□ 0.27
CTCF-201ENST00000264010 ULBP1Q9BZM6 244 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 WWP1Q9H0M0 922 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 WDCPQ9H6R7 721 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 GRID1Q9ULK0 1009 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 B3GAT3O94766 335 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 YBX3P16989 372 aaKnown RBP eCLIP16.75■□□□□ 0.273e-9■□□□□ 9.6
CTCF-201ENST00000264010 BGNP21810 368 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 LMO2P25791 158 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SCNN1AP37088 669 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 MRPS5P82675 430 aaKnown RBP16.75■□□□□ 0.27
CTCF-201ENST00000264010 GAD2Q05329 585 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 MPP2Q14168 576 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SMAD1Q15797 465 aaKnown RBP16.75■□□□□ 0.27
CTCF-201ENST00000264010 ANKRD20A2Q5SQ80 823 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 ANKRD20A1Q5TYW2 823 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 BTBD8Q5XKL5 378 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 MCUQ8NE86 351 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 RRN3Q9NYV6 651 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 TARSP26639 723 aaKnown RBP16.75■□□□□ 0.27
CTCF-201ENST00000264010 ELF3P78545 371 aaPredicted RBP16.75■□□□□ 0.27
CTCF-201ENST00000264010 MSS51Q4VC12 460 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SCN4BQ8IWT1 228 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 TTC16Q8NEE8 873 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 EBNA1BP2Q99848 306 aaKnown RBP16.75■□□□□ 0.27
CTCF-201ENST00000264010 LPIN3Q9BQK8 851 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 SIKE1Q9BRV8 207 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 ADAMTS10Q9H324 1103 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 MID2Q9UJV3 735 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 CDY2AQ9Y6F7 541 aa16.75■□□□□ 0.27
CTCF-201ENST00000264010 RBBP6Q7Z6E9 1792 aaKnown RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 C3orf70A6NLC5 250 aaPredicted RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 CLDN5O00501 218 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 RPLP2P05387 115 aaKnown RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 KITP10721 976 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 EPHB2P29323 1055 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 PCYT1AP49585 367 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 NRLP54845 237 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 HDAC4P56524 1084 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 LILRA4P59901 499 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 PHEXP78562 749 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 MRPS6P82932 125 aaKnown RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 DMPKQ09013 629 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 LENG1Q96BZ8 264 aaPredicted RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 PIWIL1Q96J94 861 aaKnown RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 SCYL1Q96KG9 808 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 KCTD15Q96SI1 283 aaPredicted RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 CDHR5Q9HBB8 845 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 RCOR3Q9P2K3 495 aaPredicted RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 HEY2Q9UBP5 337 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 CLUHO75153 1309 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 ETS2P15036 469 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 ZBTB17Q13105 803 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 RRAGCQ9HB90 399 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 CASTOR2A6NHX0 329 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 NVLO15381 856 aaKnown RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 NCAM2O15394 837 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 ATP9BO43861 1147 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 THPOP40225 353 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 CHI3L2Q15782 390 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 DPYSL2Q16555 572 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 TNFAIP8L3Q5GJ75 292 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 FAM81AQ8TBF8 368 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms