RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MCOLN3Q8TDD5 553 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 TMEM120AQ9BXJ8 343 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 DCLRE1BQ9H816 532 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 GPAMQ9HCL2 828 aa19.6■□□□□ 0.73
UPF1-201ENST00000262803 HALP42357 657 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 CD151P48509 253 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 PEX6Q13608 980 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 CCDC142Q17RM4 750 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 OTOP1Q7RTM1 612 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 DPF3Q92784 378 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 LENG9Q96B70 501 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 FDXACB1Q9BRP7 624 aaPredicted RBP19.59■□□□□ 0.73
UPF1-201ENST00000262803 PAPOLBQ9NRJ5 636 aaKnown RBP19.59■□□□□ 0.73
UPF1-201ENST00000262803 STMN3Q9NZ72 180 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 MAGEA13PA6NCF6 341 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 RNF103O00237 685 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 ACKR2O00590 384 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 VTNP04004 478 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 MYL4P12829 197 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 BGNP21810 368 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 PAN2Q504Q3 1202 aaKnown RBP19.59■□□□□ 0.73
UPF1-201ENST00000262803 SCARA3Q6AZY7 606 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 ZNF606Q8WXB4 792 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 CIPCQ9C0C6 399 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 CAAP1Q9H8G2 361 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 NFASCO94856 1347 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 SAC3D1A6NKF1 404 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 FYNP06241 537 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 CCNG1P51959 295 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 RAD23AP54725 363 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 ALDH6A1Q02252 535 aaKnown RBP19.59■□□□□ 0.73
UPF1-201ENST00000262803 TRIM71Q2Q1W2 868 aaKnown RBP19.59■□□□□ 0.73
UPF1-201ENST00000262803 TTC33Q6PID6 262 aaPredicted RBP19.59■□□□□ 0.73
UPF1-201ENST00000262803 KCNK18Q7Z418 384 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 KIDINS220Q9ULH0 1771 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 GLRBP48167 497 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 RASA2Q15283 850 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 RXFP1Q9HBX9 757 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 MIEF1Q9NQG6 463 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 NR2E3Q9Y5X4 410 aa19.59■□□□□ 0.73
UPF1-201ENST00000262803 CYP1A1P04798 512 aaPredicted RBP19.58■□□□□ 0.73
UPF1-201ENST00000262803 RARAP10276 462 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 BMPR2Q13873 1038 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 NFYCQ13952 458 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 BTG3Q14201 252 aaPredicted RBP19.58■□□□□ 0.73
UPF1-201ENST00000262803 PPM1LQ5SGD2 360 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 STRA8Q7Z7C7 330 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 BSNDQ8WZ55 320 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 APOL2Q9BQE5 337 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 LRRC4BQ9NT99 713 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 VANGL2Q9ULK5 521 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 LZTS1Q9Y250 596 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 CYP2F1P24903 491 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 KLRC2P26717 231 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 PSEN2P49810 448 aa19.58■□□□□ 0.73
UPF1-201ENST00000262803 HMX1Q9NP08 348 aaPredicted RBP19.58■□□□□ 0.73
UPF1-201ENST00000262803 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.58■□□□□ 0.73
UPF1-201ENST00000262803 FAM237AA0A1B0GTK4 181 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 C10orf88Q9H8K7 445 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 NT5MQ9NPB1 228 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 GNG14A0A1W2PPG7 69 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 MTA2O94776 668 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 CNPP09543 421 aaKnown RBP19.58■□□□□ 0.72
UPF1-201ENST00000262803 PGAM1P18669 254 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 DDX39BQ13838 428 aaKnown RBP19.58■□□□□ 0.72
UPF1-201ENST00000262803 KPNB1Q14974 876 aaKnown RBP19.58■□□□□ 0.72
UPF1-201ENST00000262803 PDPK2PQ6A1A2 396 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 ILDR2Q71H61 639 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 TMEM39AQ9NV64 488 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 INTS13Q9NVM9 706 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 USE1Q9NZ43 259 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 PCDHA3Q9Y5H8 950 aa19.58■□□□□ 0.72
UPF1-201ENST00000262803 CCDC189A1A4V9 331 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 CBX4O00257 560 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 CXCL8P10145 99 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 HLA-DQA1Q5Y7H0 255 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 OTOAQ7RTW8 1153 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 AVENQ9NQS1 362 aaPredicted RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 GDF3Q9NR23 364 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 FRMPD4Q14CM0 1322 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 FAM220BPB1ANY3 271 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 PABPC1P11940 636 aaKnown RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 INSRRP14616 1297 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 TFE3P19532 575 aaPredicted RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 ALDH5A1P51649 535 aaPredicted RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 BRSK2Q8IWQ3 736 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 WDR48Q8TAF3 677 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 CPB2Q96IY4 423 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 ACTR8Q9H981 624 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 XPNPEP3Q9NQH7 507 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 COMMD8Q9NX08 183 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 CNTNAP2Q9UHC6 1331 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 TNS2Q63HR2 1409 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 DNALI1O14645 258 aaPredicted RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 PTPN4P29074 926 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 IDI2Q9BXS1 227 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 ZCWPW1Q9H0M4 648 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 TAGLN3Q9UI15 199 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 FGF10O15520 208 aaPredicted RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 JCHAINP01591 159 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms