RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CRLS1Q9UJA2 301 aa6.22□□□□□ -1.41
VPS13D-201ENST00000011700 A0A1W2PQ72 361 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 F8VZ95 297 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 AHCYL1O43865 530 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 SLC4A1P02730 911 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 RBP3P10745 1247 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 GYG1P46976 350 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 DRG2P55039 364 aaKnown RBP6.21□□□□□ -1.41
VPS13D-201ENST00000011700 C21orf59P57076 290 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 ACAP2Q15057 778 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 BROXQ5VW32 411 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 TXNDC11Q6PKC3 985 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 PACS1Q6VY07 963 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 STRADAQ7RTN6 431 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 NEDD1Q8NHV4 660 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 HDAC2Q92769 488 aaKnown RBP6.21□□□□□ -1.41
VPS13D-201ENST00000011700 LENG9Q96B70 501 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 PPP1R16AQ96I34 528 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 MMP19Q99542 508 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 KCTD14Q9BQ13 255 aaPredicted RBP6.21□□□□□ -1.41
VPS13D-201ENST00000011700 PLEKHA4Q9H4M7 779 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 THG1LQ9NWX6 298 aaKnown RBP6.21□□□□□ -1.41
VPS13D-201ENST00000011700 ZMYM5Q9UJ78 669 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 SPATA2Q9UM82 520 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 LAMA4Q16363 1823 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 A0A1W2PQ67 120 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 H3BNH8 94 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 ZMYND10O75800 440 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 ABHD2P08910 425 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 SUPT20HL2P0C7V6 817 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 ERVK-10P10266 1014 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 YWHAZP63104 245 aaKnown RBP6.21□□□□□ -1.41
VPS13D-201ENST00000011700 DPYSQ14117 519 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 PTGISQ16647 500 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 PDPK2PQ6A1A2 396 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF786Q8N393 782 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 TRPV3Q8NET8 790 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 GPRASP2Q96D09 838 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 OTUD5Q96G74 571 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 INTS2Q9H0H0 1204 aaKnown RBP6.21□□□□□ -1.41
VPS13D-201ENST00000011700 GREM2Q9H772 168 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.21□□□□□ -1.414e-7■■■□□ 15
VPS13D-201ENST00000011700 PCDHB6Q9Y5E3 794 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 UBR1Q8IWV7 1749 aa6.21□□□□□ -1.41
VPS13D-201ENST00000011700 RGS14O43566 566 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TMCC2O75069 709 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NR2C1P13056 603 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ATF6P18850 670 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NFKB1P19838 968 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 YWHAQP27348 245 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SLC34A1Q06495 639 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 KLHL17Q6TDP4 642 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF605Q86T29 641 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TPCN2Q8NHX9 752 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 PTCD2Q8WV60 388 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 RFKQ969G6 155 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NSMCE2Q96MF7 247 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 FAM213AQ9BRX8 229 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 VANGL2Q9ULK5 521 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 C3P01024 1663 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 E9PBE3 544 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 UBDO15205 165 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 POMCP01189 267 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 UGT1A5P35504 534 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TXNRD1Q16881 649 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 CIAPIN1Q6FI81 312 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 MACC1Q6ZN28 852 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NOP9Q86U38 636 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ANKRD13AQ8IZ07 590 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 PGM2Q96G03 612 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 DDX47Q9H0S4 455 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TADA2AO75478 443 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SULT1E1P49888 294 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SNAP47Q5SQN1 464 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 ANKRD40Q6AI12 368 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SNRNP48Q6IEG0 339 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TRPV1Q8NER1 839 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 STOX2Q9P2F5 926 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SH3GLB1Q9Y371 365 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 AIM2O14862 343 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 EPN2O95208 641 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 GLP2RO95838 553 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SERPINF2P08697 491 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TLX1P31314 330 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TBL3Q12788 808 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 RASA2Q15283 850 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 BEND7Q8N7W2 519 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TMEM79Q9BSE2 394 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 PNPLA3Q9NST1 481 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 TUBE1Q9UJT0 475 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 RAB23Q9ULC3 237 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 MON2Q7Z3U7 1717 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 GRAP2O75791 330 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 FSBPO95073 299 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 NMT1P30419 496 aaKnown RBP6.21□□□□□ -1.42
VPS13D-201ENST00000011700 HHIPL2Q6UWX4 724 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 LRRC74BQ6ZQY2 392 aa6.21□□□□□ -1.42
VPS13D-201ENST00000011700 SLFN11Q7Z7L1 901 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms