RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MARK2Q7KZI7 788 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CMTR2Q8IYT2 770 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 LIX1Q8N485 282 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CAPSLQ8WWF8 208 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 REEP2Q9BRK0 252 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 FAM124BQ9H5Z6 455 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RGS18Q9NS28 235 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 STX18Q9P2W9 335 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 TRMT6Q9UJA5 497 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 DMTF1Q9Y222 760 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ASTN2O75129 1339 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 EIF2S1P05198 315 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 TLX1P31314 330 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SNX1Q13596 522 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 EDRF1Q3B7T1 1238 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 BBS9Q3SYG4 887 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 AMZ1Q400G9 498 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 DGKKQ5KSL6 1271 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 TRIM65Q6PJ69 517 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 IL27RAQ6UWB1 636 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RPAINQ86UA6 219 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RHOT1Q8IXI2 618 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ALLCQ8N6M5 410 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 LRGUKQ96M69 825 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 NIFKQ9BYG3 293 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 THAP9Q9H5L6 903 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 USP29Q9HBJ7 922 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GTF3C4Q9UKN8 822 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SESN1Q9Y6P5 492 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ZNF862O60290 1169 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ZNF217O75362 1048 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 PMPCBO75439 489 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SLC35G4P0C7Q5 338 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 OR56A5P0C7T3 313 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ELFN1P0C7U0 828 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 FSCBQ5H9T9 825 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 TJAP1Q5JTD0 557 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 MARC1Q5VT66 337 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 NAPEPLDQ6IQ20 393 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GPAT2Q6NUI2 795 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SLFN11Q7Z7L1 901 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CYLDQ9NQC7 956 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GKN1Q9NS71 199 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RABGEF1Q9UJ41 708 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CLUHO75153 1309 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SPATA31C2B4DYI2 1134 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 UQCRBP14927 111 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 PER3P56645 1201 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GJA9P57773 515 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 C6orf132Q5T0Z8 1188 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SLC25A41Q8N5S1 370 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GDPD5Q8WTR4 605 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GRPEL1Q9HAV7 217 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 NFKBIL1Q9UBC1 381 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 MORF4L1Q9UBU8 362 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 PPIEQ9UNP9 301 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 PADI2Q9Y2J8 665 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 AAR2Q9Y312 384 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 FAM170BA6NMN3 283 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 POC1B-GALNT4F8VUJ3 575 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 HGSO14964 777 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RNF40O75150 1001 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SUPT3HO75486 399 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 VARSP26640 1264 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 DGKGP49619 791 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GEMP55040 296 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 LMAN2Q12907 356 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 FGL2Q14314 439 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 GRB14Q14449 540 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 HABP4Q5JVS0 413 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SNX30Q5VWJ9 437 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ANKS1BQ7Z6G8 1248 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 OR10G6Q8NH81 332 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ARHGEF2Q92974 986 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 C18orf25Q96B23 403 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 PHF21AQ96BD5 680 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RMDN2Q96LZ7 410 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SMARCAL1Q9NZC9 954 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 FTSJ1Q9UET6 329 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RWDD2AQ9UIY3 292 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 NINQ8N4C6 2090 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 HNRNPA1P09651 372 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ALDH4A1P30038 563 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CENPAP49450 140 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RPP38P78345 283 aaKnown RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 FMR1Q06787 632 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 STX3Q13277 289 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 KIF19Q2TAC6 998 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 TRAPPC11Q7Z392 1133 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 ELOA2Q8IYF1 753 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 RASEFQ8IZ41 740 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 DSELQ8IZU8 1212 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 SYT2Q8N9I0 419 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CCSER1Q9C0I3 900 aa5.16□□□□□ -1.58
SCN1A-218ENST00000640036 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.16□□□□□ -1.58
SCN1A-218ENST00000640036 PIPSLA2A3N6 862 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 PFDN1O60925 122 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TIPRLO75663 272 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 IQCF3P0C7M6 154 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TRIM49P0CI25 452 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms