RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 VAV1P15498 845 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GPR15P49685 360 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 FAM45BPQ6NSW5 357 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TMEM154Q6P9G4 183 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PTAR1Q7Z6K3 402 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 COL23A1Q86Y22 540 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ASCC2Q9H1I8 757 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ATP13A3Q9H7F0 1226 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 CYP3A43Q9HB55 503 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 NCF1BA6NI72 391 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 LRRC72A6NJI9 287 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NCF1CA8MVU1 366 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TSPAN3O60637 253 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NCF1P14598 390 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PIK3CGP48736 1102 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 GUCY1A3Q02108 690 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ATP6AP1LQ52LC2 224 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 GALNT7Q86SF2 657 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ACOT1Q86TX2 421 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TXNRD3Q86VQ6 643 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CCNJLQ8IV13 435 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ELAC2Q9BQ52 826 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 FAIM2Q9BWQ8 316 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 DCTN4Q9UJW0 460 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ADAM21Q9UKJ8 722 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SMG5Q9UPR3 1016 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PLAAQ9Y263 795 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 KRT6AP02538 564 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 KRT6BP04259 564 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CFIP05156 583 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ACADLP28330 430 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 KRT6CP48668 564 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ITGA8P53708 1063 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 BOP1Q14137 746 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 BEND6Q5SZJ8 279 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 GJC2Q5T442 439 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 MARC1Q5VT66 337 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PMF1Q6P1K2 205 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ZDHHC17Q8IUH5 632 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SLC30A5Q8TAD4 765 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 AVENQ9NQS1 362 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D14Q9P2M4 693 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 BARX2Q9UMQ3 279 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 N6AMT1Q9Y5N5 214 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TIMM44O43615 452 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 HAUS5O94927 633 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PIK3R1P27986 724 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NMT1P30419 496 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 MAGEA10P43363 369 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 LAMTOR4Q0VGL1 99 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 MKRN4PQ13434 485 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 LRRC32Q14392 662 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CDCA5Q96FF9 252 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 REEP2Q9BRK0 252 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CBWD1Q9BRT8 395 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 RSPH9Q9H1X1 276 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ATP13A1Q9HD20 1204 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 GRID1Q9ULK0 1009 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 DIP2AQ14689 1571 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NBNO60934 754 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 FARP2O94887 1054 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 KLHL2O95198 593 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NFATC1O95644 943 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 LAG3P18627 525 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 MAPKAPK2P49137 400 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PCYT1AP49585 367 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CLK1P49759 484 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SERPINB8P50452 374 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TAS1R3Q7RTX0 852 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NT5DC3Q86UY8 548 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CDR2LQ86X02 465 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CBWD2Q8IUF1 395 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 WDR36Q8NI36 951 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PGLYRP2Q96PD5 576 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ADAM2Q99965 735 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ACTR8Q9H981 624 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NPHS2Q9NP85 383 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SMPD4Q9NXE4 827 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 COPG2Q9UBF2 871 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 NOX1Q9Y5S8 564 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TRIM64A6NGJ6 449 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CSH1P0DML2 217 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CSH2P0DML3 217 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 BLKP51451 505 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 MRPS6P82932 125 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SMARCB1Q12824 385 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CUL2Q13617 745 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ZMYND11Q15326 602 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SLC39A12Q504Y0 691 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 HECTD3Q5T447 861 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 GALNT18Q6P9A2 607 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 RNF44Q7L0R7 432 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 FAM20CQ8IXL6 584 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ISCA1Q9BUE6 129 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ABHD10Q9NUJ1 306 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 VAV3Q9UKW4 847 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SOX13Q9UN79 622 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms