RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 P2RY11Q96G91 374 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 CEP63Q96MT8 703 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 ITM2CQ9NQX7 267 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 WASH3PC4AMC7 463 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 O00370 1275 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 SYNCRIPO60506 623 aaKnown RBP19.25■□□□□ 0.67
CLN3-241ENST00000635861 CD19P15391 556 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 IL12RB1P42701 662 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 NUCB2P80303 420 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 ADIGQ0VDE8 80 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 CETN1Q12798 172 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 FOXC1Q12948 553 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 SLC14A1Q13336 389 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 FMNL3Q8IVF7 1028 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 RBBP8NLQ8NC74 664 aaPredicted RBP19.25■□□□□ 0.67
CLN3-241ENST00000635861 WFIKKN2Q8TEU8 576 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 IRGQQ8WZA9 623 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 DHTKD1Q96HY7 919 aaPredicted RBP19.25■□□□□ 0.67
CLN3-241ENST00000635861 ZDHHC5Q9C0B5 715 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 DNAAF2Q9NVR5 837 aaKnown RBP19.25■□□□□ 0.67
CLN3-241ENST00000635861 WSB2Q9NYS7 404 aaPredicted RBP19.25■□□□□ 0.67
CLN3-241ENST00000635861 IGF2RP11717 2491 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 TMEM8BA6NDV4 472 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 P4HA2O15460 535 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 IGLV3-19P01714 112 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 C7P10643 843 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 FMO5P49326 533 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 PMS1P54277 932 aaKnown RBP19.24■□□□□ 0.67
CLN3-241ENST00000635861 ZNF234Q14588 700 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 PKDCCQ504Y2 493 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 BSPRYQ5W0U4 402 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 LCLAT1Q6UWP7 414 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 RGL4Q8IZJ4 473 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 MINDY1Q8N5J2 469 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 ZNF557Q8N988 423 aaPredicted RBP19.24■□□□□ 0.67
CLN3-241ENST00000635861 DNASE2BQ8WZ79 361 aa19.24■□□□□ 0.67
CLN3-241ENST00000635861 GTPBP2Q9BX10 602 aaKnown RBP19.24■□□□□ 0.67
CLN3-241ENST00000635861 ZZEF1O43149 2961 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 H0Y626 953 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 TULP2O00295 520 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 TRIM16O95361 564 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 RDXP35241 583 aaKnown RBP19.23■□□□□ 0.67
CLN3-241ENST00000635861 ARID5AQ03989 594 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 ADGRF1Q5T601 910 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 MSANTD2Q6P1R3 559 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 UNQ6494/PRO21346Q6UXR6 183 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 DEFB119Q8N690 84 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 PRCCQ92733 491 aaPredicted RBP19.23■□□□□ 0.67
CLN3-241ENST00000635861 SIPA1Q96FS4 1042 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 NT5C1BQ96P26 610 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 ADAM33Q9BZ11 813 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 MKRN2Q9H000 416 aaKnown RBP19.23■□□□□ 0.67
CLN3-241ENST00000635861 PCED1AQ9H1Q7 454 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 FBRSQ9HAH7 460 aa19.23■□□□□ 0.67
CLN3-241ENST00000635861 FAM208BQ5VWN6 2430 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 TRIM49BA6NDI0 452 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 YJEFN3A6XGL0 299 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 E7ENQ6 273 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 NCAM1P13591 858 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 HOXD9P28356 352 aaPredicted RBP19.22■□□□□ 0.67
CLN3-241ENST00000635861 DAOAP59103 153 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 PLEKHG6Q3KR16 790 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 MPP7Q5T2T1 576 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 SERPINA13PQ6UXR4 307 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 TMPRSS6Q8IU80 811 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 UNC45BQ8IWX7 931 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLN3-241ENST00000635861 TOE1Q96GM8 510 aaKnown RBP19.22■□□□□ 0.67
CLN3-241ENST00000635861 CIPCQ9C0C6 399 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 SLC6A17Q9H1V8 727 aa19.22■□□□□ 0.67
CLN3-241ENST00000635861 ASPMQ8IZT6 3477 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 A0A1B0GTW7 788 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 ACADMP11310 421 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 TPMTP51580 245 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 COPAP53621 1224 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 RING1Q06587 406 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 CNGA2Q16280 664 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 NUGGCQ68CJ6 796 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 TMEM270Q6UE05 265 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 AHI1Q8N157 1196 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 KDF1Q8NAX2 398 aaPredicted RBP19.21■□□□□ 0.67
CLN3-241ENST00000635861 UBA3Q8TBC4 463 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 SLC35F5Q8WV83 523 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 GOLGA1Q92805 767 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 AZIN2Q96A70 460 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 TMA16Q96EY4 203 aaKnown RBP19.21■□□□□ 0.67
CLN3-241ENST00000635861 HSFY1Q96LI6 401 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 NUP58Q9BVL2 599 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 CD93Q9NPY3 652 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 CLEC4EQ9ULY5 219 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 NEUROG3Q9Y4Z2 214 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 NUMA1Q14980 2115 aa19.21■□□□□ 0.67
CLN3-241ENST00000635861 NYNRINQ9P2P1 1898 aaKnown RBP19.21■□□□□ 0.67
CLN3-241ENST00000635861 TP53BP1Q12888 1972 aaPredicted RBP19.21■□□□□ 0.67
CLN3-241ENST00000635861 BICDL2A1A5D9 508 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 MEI4A8MW99 385 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 IRAK2O43187 625 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 GJB3O75712 270 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 FBXO21O94952 628 aa19.2■□□□□ 0.66
CLN3-241ENST00000635861 EPHX1P07099 455 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms