RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 USP2O75604 605 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 SURF6O75683 361 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CPB1P15086 417 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TAC1P20366 129 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 PSMA2P25787 234 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 MAOBP27338 520 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TLR1Q15399 786 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 SGCAQ16586 387 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ANKRD40Q6AI12 368 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TTI2Q6NXR4 508 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ALKBH5Q6P6C2 394 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 SHQ1Q6PI26 577 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CCDC149Q6ZUS6 474 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ZSWIM9Q86XI8 627 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 FOXP4Q8IVH2 680 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 HERC6Q8IVU3 1022 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TPH2Q8IWU9 490 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 SCUBE3Q8IX30 993 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TAGAPQ8N103 731 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CPA6Q8N4T0 437 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ANKRD13CQ8N6S4 541 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ZBTB38Q8NAP3 1195 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 RBM15BQ8NDT2 890 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ZNF560Q96MR9 790 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 RUNDC3BQ96NL0 473 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 WRNIP1Q96S55 665 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 KIFC3Q9BVG8 833 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 EDEM3Q9BZQ6 932 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ZMYND12Q9H0C1 365 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NEUROG2Q9H2A3 272 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 LY9Q9HBG7 655 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 SCUBE2Q9NQ36 999 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 IARS2Q9NSE4 1012 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CYB5R1Q9UHQ9 305 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 INVSQ9Y283 1065 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ACOT9Q9Y305 439 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 FAM83GA6ND36 823 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 LRRIQ4A6NIV6 560 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 K7ENM7 598 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 MAN1A2O60476 641 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 GCATO75600 419 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 WDPCPO95876 746 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ATP5BP06576 529 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NPR1P16066 1061 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TRHRP34981 398 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NR4A2P43354 598 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 POU3F4P49335 361 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ESRRGP62508 458 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ROR1Q01973 937 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 GALNT2Q10471 571 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 BRMS1LQ5PSV4 323 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CHADLQ6NUI6 762 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TYW1BQ6NUM6 668 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 IYDQ6PHW0 289 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 KDELC1Q6UW63 502 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ARSKQ6UWY0 536 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 VSTM1Q6UX27 236 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NLRX1Q86UT6 975 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 DEPDC4Q8N2C3 294 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NLGN1Q8N2Q7 840 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CLIP4Q8N3C7 705 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NAT8LQ8N9F0 302 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ST13P5Q8NFI4 369 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 OR6P1Q8NGX9 317 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 RAB3IL1Q8TBN0 382 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 RAB7BQ96AH8 199 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 C12orf43Q96C57 262 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 FMO2Q99518 471 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 ZPBPQ9BS86 351 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 KIFC1Q9BW19 673 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 SLC2A11Q9BYW1 496 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TRIM45Q9H8W5 580 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 NGRNQ9NPE2 291 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 PKD2L2Q9NZM6 624 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 EIF3KQ9UBQ5 218 aaKnown RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 DUSP12Q9UNI6 340 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 RPH3AQ9Y2J0 694 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 CAB39Q9Y376 341 aaPredicted RBP9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TBX22Q9Y458 520 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 TRAF6Q9Y4K3 522 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 COL4A3BPQ9Y5P4 624 aa9.11□□□□□ -0.95
COMMD3-215ENST00000602574 LAMA4Q16363 1823 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 SPEF2Q9C093 1822 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 TMEM120BA0PK00 339 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 WASLO00401 505 aaPredicted RBP9.1□□□□□ -0.95
COMMD3-215ENST00000602574 AKAP10O43572 662 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 GAS2O43903 313 aaKnown RBP9.1□□□□□ -0.95
COMMD3-215ENST00000602574 CCNT2O60583 730 aaKnown RBP9.1□□□□□ -0.95
COMMD3-215ENST00000602574 DNAJA2O60884 412 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 RASGRP1O95267 797 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 IMPDH1P20839 514 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 AMPD1P23109 780 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 DCKP27707 260 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 RBL1P28749 1068 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 PBLDP30039 288 aaPredicted RBP9.1□□□□□ -0.95
COMMD3-215ENST00000602574 CIITAP33076 1130 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 SOX6P35712 828 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 SOX11P35716 441 aa9.1□□□□□ -0.95
COMMD3-215ENST00000602574 SLCO1A2P46721 670 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms