RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CFAP97Q9P2B7 532 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 NCKAP1Q9Y2A7 1128 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 A0A1W2PQH9 124 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 POLBP06746 335 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 OAS2P29728 719 aaKnown RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 ZNF284Q2VY69 593 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 PPIL6Q8IXY8 311 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 SLC4A11Q8NBS3 891 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CYTH2Q99418 400 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 EGFL8Q99944 293 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CACYBPQ9HB71 228 aaKnown RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 ABCB6Q9NP58 842 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 TAS2R14Q9NYV8 317 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 SEPT3Q9UH03 358 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 TELO2Q9Y4R8 837 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 WNK3Q9BYP7 1800 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 ADAMTS4O75173 837 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 GPR32O75388 356 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 SKOR1P84550 965 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 IFNLR1Q8IU57 520 aaPredicted RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 ANKMY2Q8IV38 441 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 CMTR2Q8IYT2 770 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 LNX1Q8TBB1 728 aaPredicted RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 FOPNLQ96NB1 174 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 LRRC1Q9BTT6 524 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 NRDE2Q9H7Z3 1164 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 RBM12Q9NTZ6 932 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 PAIP2BQ9ULR5 123 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 CYP1A2P05177 515 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 TYK2P29597 1187 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ATP1A2P50993 1020 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ZRANB3Q5FWF4 1079 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 FAXCQ5TGI0 409 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 COG1Q8WTW3 980 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 MCRS1Q96EZ8 462 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ZYG11BQ9C0D3 744 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 CYLDQ9NQC7 956 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ARHGEF38Q9NXL2 777 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 SMARCAL1Q9NZC9 954 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PMM2O15305 246 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PJA2O43164 708 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 TBL1XO60907 577 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PPFIA2O75334 1257 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PCDH8O95206 1070 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 CHEK2O96017 543 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 CCNG2Q16589 344 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 SOWAHAQ2M3V2 549 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ARHGAP17Q68EM7 881 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PTRHD1Q6GMV3 140 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 SLC39A4Q6P5W5 647 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 MFSD7Q6UXD7 560 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 TMC5Q6UXY8 1006 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 IRF2BP2Q7Z5L9 587 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 VSIG1Q86XK7 387 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 SRRM1Q8IYB3 904 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 LEMD2Q8NC56 503 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 POF1BQ8WVV4 589 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 AUTS2Q8WXX7 1259 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ATG4AQ8WYN0 398 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 GPR88Q9GZN0 384 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 APOBEC3GQ9HC16 384 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 ZMYM5Q9UJ78 669 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 STYXL1Q9Y6J8 313 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 KPNA3O00505 521 aaPredicted RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 ATP8B1O43520 1251 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 NOL3O60936 208 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 SPAG6O75602 509 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 NFATC1O95644 943 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 GALTP07902 379 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 RARAP10276 462 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PRLRP16471 622 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 LMO2P25791 158 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 GJA8P48165 433 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 IRX4P78413 519 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 IRX1P78414 480 aaPredicted RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 PTPN20Q4JDL3 420 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 FASTKD1Q53R41 847 aaKnown RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 LRRC38Q5VT99 294 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ERAP2Q6P179 960 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 TBC1D1Q86TI0 1168 aaPredicted RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 STK32AQ8WU08 396 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 SNX19Q92543 992 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 CASP10Q92851 521 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 ZNF669Q96BR6 464 aaPredicted RBP10.12□□□□□ -0.79
LIG3-216ENST00000593099 ERP44Q9BS26 406 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 VPS9D1Q9Y2B5 631 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 PCDHA3Q9Y5H8 950 aa10.12□□□□□ -0.79
LIG3-216ENST00000593099 RBAK-RBAKDNI3L0D1 243 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 MMP8P22894 467 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 THEMIS2Q5TEJ8 643 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 MEI1Q5TIA1 1274 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 TTC30BQ8N4P2 665 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 CPA6Q8N4T0 437 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 FAM71BQ8TC56 605 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIG3-216ENST00000593099 B3GALT6Q96L58 329 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 DPEP3Q9H4B8 488 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 ALG13Q9NP73 1137 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 CHCHD3Q9NX63 227 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 NSMCE4AQ9NXX6 385 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms