RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 GMEB2Q9UKD1 530 aa6.65□□□□□ -1.34
NUP88-212ENST00000576708 ITGA11Q9UKX5 1188 aa6.65□□□□□ -1.34
NUP88-212ENST00000576708 RAB23Q9ULC3 237 aa6.65□□□□□ -1.34
NUP88-212ENST00000576708 WNT6Q9Y6F9 365 aa6.65□□□□□ -1.34
NUP88-212ENST00000576708 OTOGLQ3ZCN5 2332 aa6.65□□□□□ -1.35
NUP88-212ENST00000576708 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 ZNF233A6NK53 670 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 K7ELQ4 463 aaPredicted RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 GABRDO14764 452 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 SPTLC2O15270 562 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 TGFB1I1O43294 461 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 TNNC2P02585 160 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CSH1P0DML2 217 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CSH2P0DML3 217 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 BDNFP23560 247 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 GJA4P35212 333 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 GALK1P51570 392 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CYP2J2P51589 502 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CACNA2D1P54289 1103 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 RPL10AP62906 217 aaKnown RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 ASIC1P78348 528 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 ZXDBP98169 803 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 SLBPQ14493 270 aaKnown RBP eCLIP6.64□□□□□ -1.35
NUP88-212ENST00000576708 PPP2R5DQ14738 602 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 MTF1Q14872 753 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 NFE2Q16621 373 aaPredicted RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 TMEM196Q5HYL7 178 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 PRAMEF13Q5VWM6 474 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 LAIR1Q6GTX8 287 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 FAM171BQ6P995 826 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CEP68Q76N32 757 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 EPM2AIP1Q7L775 607 aaPredicted RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 TRAPPC11Q7Z392 1133 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 LIMS2Q7Z4I7 341 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 LONP2Q86WA8 852 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 GRAMD1CQ8IYS0 662 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 TMEM86AQ8N2M4 240 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 TOP6BLQ8N6T0 577 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 PLEKHO2Q8TD55 490 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 LEO1Q8WVC0 666 aaPredicted RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 GATA6Q92908 595 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 SECISBP2LQ93073 1101 aaKnown RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 MYLPFQ96A32 169 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CCDC127Q96BQ5 260 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 MSANTD3Q96H12 275 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 INTS4Q96HW7 963 aaKnown RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 ANKRD36BP1Q96IX9 119 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 SYT15Q9BQS2 421 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 TRIM9Q9C026 710 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 LINC00597Q9H2U6 94 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 ZSCAN16Q9H4T2 348 aaPredicted RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 SEMA4GQ9NTN9 838 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 DUS2Q9NX74 493 aaKnown RBP6.64□□□□□ -1.35
NUP88-212ENST00000576708 GCNT4Q9P109 453 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 EFR3BQ9Y2G0 817 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 F5P12259 2224 aa6.64□□□□□ -1.35
NUP88-212ENST00000576708 CLDN5O00501 218 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 TRDMT1O14717 391 aaKnown RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 POLR2DO15514 142 aaKnown RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 DNAJA2O60884 412 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 OBSL1O75147 1896 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 LEFTY1O75610 366 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 PAPSS2O95340 614 aaPredicted RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 IGLV1-40P01703 118 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 F13BP05160 661 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CKMP06732 381 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 RETP07949 1114 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 DLATP10515 647 aaKnown RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 WARSP23381 471 aaKnown RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 DDX6P26196 483 aaKnown RBP eCLIP6.63□□□□□ -1.35
NUP88-212ENST00000576708 PCSK1P29120 753 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 GRIK1P39086 918 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 AFMP43652 599 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 LHX1P48742 406 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CASP4P49662 377 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CYP27A1Q02318 531 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 GRSF1Q12849 480 aaKnown RBP eCLIP6.63□□□□□ -1.35
NUP88-212ENST00000576708 IFRD2Q12894 506 aaPredicted RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 MYO1EQ12965 1108 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CUL4BQ13620 913 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 ALCAMQ13740 583 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 SF3A2Q15428 464 aaKnown RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 ZNF77Q15935 545 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CFAP221Q4G0U5 840 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 MDH1BQ5I0G3 518 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 FAM26FQ5R3K3 315 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 FBXW10Q5XX13 1052 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CC2D1AQ6P1N0 951 aaPredicted RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 C1orf228Q6PIY5 440 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CCDC81Q6ZN84 652 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 ARMCX6Q7L4S7 300 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 KBTBD6Q86V97 674 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 WDR5BQ86VZ2 330 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 KCT2Q8NC54 265 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 SH3RF2Q8TEC5 729 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 SCFD1Q8WVM8 642 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 TRMT2BQ96GJ1 504 aaKnown RBP6.63□□□□□ -1.35
NUP88-212ENST00000576708 PCED1BQ96HM7 432 aa6.63□□□□□ -1.35
NUP88-212ENST00000576708 CHAMP1Q96JM3 812 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms