RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 NUCKS1Q9H1E3 243 aaKnown RBP16.45■□□□□ 0.22
CHD3-215ENST00000572750 RBM12Q9NTZ6 932 aaKnown RBP16.45■□□□□ 0.22
CHD3-215ENST00000572750 DDIT4Q9NX09 232 aa16.45■□□□□ 0.22
CHD3-215ENST00000572750 ADAM22Q9P0K1 906 aa16.45■□□□□ 0.22
CHD3-215ENST00000572750 CALCOCO1Q9P1Z2 691 aa16.45■□□□□ 0.22
CHD3-215ENST00000572750 TLR6Q9Y2C9 796 aa16.45■□□□□ 0.22
CHD3-215ENST00000572750 PKD1L2Q7Z442 2459 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 DDX3XO00571 662 aaKnown RBP eCLIP16.44■□□□□ 0.22
CHD3-215ENST00000572750 TRDMT1O14717 391 aaKnown RBP16.44■□□□□ 0.22
CHD3-215ENST00000572750 HOXC11O43248 304 aaPredicted RBP16.44■□□□□ 0.22
CHD3-215ENST00000572750 MOCS2O96007 188 aaPredicted RBP16.44■□□□□ 0.22
CHD3-215ENST00000572750 TFE3P19532 575 aaPredicted RBP16.44■□□□□ 0.22
CHD3-215ENST00000572750 SCNN1AP37088 669 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 MATKP42679 507 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 SULT1E1P49888 294 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 CDK17Q00537 523 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 AMPD2Q01433 879 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 KDSRQ06136 332 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 RING1Q06587 406 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 TRIM14Q14142 442 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 TMEM196Q5HYL7 178 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 NUGGCQ68CJ6 796 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 FSTL4Q6MZW2 842 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 TMC6Q7Z403 805 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 EMC1Q8N766 993 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 NAT16Q8N8M0 369 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 SYN2Q92777 582 aaPredicted RBP16.44■□□□□ 0.22
CHD3-215ENST00000572750 CD101Q93033 1021 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 SLC39A13Q96H72 371 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 P2RY13Q9BPV8 354 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 BBS2Q9BXC9 721 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 FBRSL1Q9HCM7 1045 aaKnown RBP16.44■□□□□ 0.22
CHD3-215ENST00000572750 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.44■□□□□ 0.22
CHD3-215ENST00000572750 DLGAP2Q9P1A6 1054 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 ZNF510Q9Y2H8 683 aa16.44■□□□□ 0.22
CHD3-215ENST00000572750 ATMINO43313 823 aaPredicted RBP16.43■□□□□ 0.22
CHD3-215ENST00000572750 MFAP3LO75121 409 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 EGFP01133 1207 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 CALB1P05937 261 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 CHRNB1P11230 501 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 TYRP14679 529 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 NOS2P35228 1153 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 GALK1P51570 392 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 GAD2Q05329 585 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 C1QBPQ07021 282 aaKnown RBP16.43■□□□□ 0.22
CHD3-215ENST00000572750 MESP2Q0VG99 397 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 NME3Q13232 169 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 FZD5Q13467 585 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 CCINQ13939 588 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 ZC3H12AQ5D1E8 599 aaKnown RBP16.43■□□□□ 0.22
CHD3-215ENST00000572750 ACAD10Q6JQN1 1059 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 Q6ZS52 159 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 FAM217AQ8IXS0 508 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 DCLK2Q8N568 766 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 NELL2Q99435 816 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 OSBPL6Q9BZF3 934 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 PLK2Q9NYY3 685 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 MARK1Q9P0L2 795 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 XPO7Q9UIA9 1087 aaKnown RBP16.43■□□□□ 0.22
CHD3-215ENST00000572750 TMEM59LQ9UK28 342 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 STAP1Q9ULZ2 295 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 R4GN57 208 aa16.43■□□□□ 0.22
CHD3-215ENST00000572750 M0QYT0 321 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 TSPAN3O60637 253 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 LMNAP02545 664 aaKnown RBP16.42■□□□□ 0.22
CHD3-215ENST00000572750 APOEP02649 317 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 SERPING1P05155 500 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 CHKAP35790 457 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 SLC6A11P48066 632 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 SGSHP51688 502 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 ZNF75DP51815 510 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 GSCP56915 257 aaPredicted RBP16.42■□□□□ 0.22
CHD3-215ENST00000572750 GRSF1Q12849 480 aaKnown RBP eCLIP16.42■□□□□ 0.22
CHD3-215ENST00000572750 FAM133BQ5BKY9 247 aaKnown RBP16.42■□□□□ 0.22
CHD3-215ENST00000572750 NADSYN1Q6IA69 706 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 DNAJC24Q6P3W2 148 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 SFTPA1Q8IWL2 248 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 UNC45BQ8IWX7 931 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 ETFBKMTQ8IXQ9 262 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 MCOLN2Q8IZK6 566 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 CPXM2Q8N436 756 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 C3orf20Q8ND61 904 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 JOSD2Q8TAC2 188 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 EZH1Q92800 747 aaPredicted RBP16.42■□□□□ 0.22
CHD3-215ENST00000572750 CFAP57Q96MR6 1250 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 TBCBQ99426 244 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 NPY6RQ99463 290 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 DNAJC7Q99615 494 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.42■□□□□ 0.22
CHD3-215ENST00000572750 LMAN1LQ9HAT1 526 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 PIGVQ9NUD9 493 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 WDR35Q9P2L0 1181 aa16.42■□□□□ 0.22
CHD3-215ENST00000572750 GOLGA6L7A0A1B0GV03 622 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 TRIM24O15164 1050 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 CACNG3O60359 315 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 ACSL4O60488 711 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 TULP3O75386 442 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 LATS1O95835 1130 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 TPM1P09493 284 aa16.41■□□□□ 0.22
CHD3-215ENST00000572750 RRM1P23921 792 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms