RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 XDHP47989 1333 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 ITIH6Q6UXX5 1313 aa3.43□□□□□ -1.86
VPS35-208ENST00000568612 C17orf113A0A1B0GUU1 675 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 A0A1B0GVL5 298 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CFAP73A6NFT4 308 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 HNRNPCL2B2RXH8 293 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 BTBD19C9JJ37 291 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ZW10O43264 779 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ADCY6O43306 1168 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PRPF3O43395 683 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 FIBPO43427 364 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SULT1B1O43704 296 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 EXTL3O43909 919 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 HNRNPCL1O60812 293 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 PHF2O75151 1096 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 RECQL4O94761 1208 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SCAF4O95104 1147 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 OR5F1O95221 314 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ANP32DO95626 131 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 OXSR1O95747 527 aaPredicted RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 GSTA1P08263 222 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ADH4P08319 380 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CCDC192P0DO97 292 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 EPB41P11171 864 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 CHRNB1P11230 501 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CDK4P11802 303 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 RXRAP19793 462 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CFL1P23528 166 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 ECHS1P30084 290 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CDC25CP30307 473 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 RPL9P32969 192 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 SERPINB6P35237 376 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CASP2P42575 452 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MTHFRP42898 656 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 CBX5P45973 191 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 GPR3P46089 330 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SLC5A3P53794 718 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 POLE2P56282 527 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ELF3P78545 371 aaPredicted RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 TBL3Q12788 808 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 ITGB3BPQ13352 177 aaPredicted RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 MTX1Q13505 466 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ACAP2Q15057 778 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 VPS72Q15906 364 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PKN2Q16513 984 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 ANO4Q32M45 955 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MYLK3Q32MK0 819 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 C19orf54Q5BKX5 351 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 FAM133BQ5BKY9 247 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 ANKRD20A8PQ5CZ79 823 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 DCAF17Q5H9S7 520 aaPredicted RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 RABL3Q5HYI8 236 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SLC10A5Q5PT55 438 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PRAMEF14Q5SWL7 426 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 HYIQ5T013 277 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SYCP2LQ5T4T6 812 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SNX30Q5VWJ9 437 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 NAA35Q5VZE5 725 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ANKS6Q68DC2 871 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 IGFL4Q6B9Z1 124 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 C8orf74Q6P047 294 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PLBD1Q6P4A8 553 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PGM2L1Q6PCE3 622 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 C16orf54Q6UWD8 224 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 BTNL9Q6UXG8 535 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 RAPH1Q70E73 1250 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ATG9AQ7Z3C6 839 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MRPL10Q7Z7H8 261 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 TRMT2AQ8IZ69 625 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 SPICE1Q8N0Z3 855 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PPM1NQ8N819 430 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 TEX19Q8NA77 164 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 RNF169Q8NCN4 708 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 REPS2Q8NFH8 660 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 GPR156Q8NFN8 814 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 LINS1Q8NG48 757 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 NEU4Q8WWR8 484 aaPredicted RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 RBM18Q96H35 190 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 ANKRD36BP1Q96IX9 119 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PGBD1Q96JS3 809 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PHACTR3Q96KR7 559 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 NSMCE3Q96MG7 304 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 FAM20AQ96MK3 541 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SLC2A13Q96QE2 648 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MTMR9Q96QG7 549 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 NELL2Q99435 816 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MPHOSPH8Q99549 860 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 LSM14BQ9BX40 385 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 CPEB1Q9BZB8 566 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 SHCBP1LQ9BZQ2 653 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 TRIM8Q9BZR9 551 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS35-208ENST00000568612 ENKD1Q9H0I2 346 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 GREM2Q9H772 168 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MMRN2Q9H8L6 949 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 BRD9Q9H8M2 597 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 TRPC7Q9HCX4 862 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PCDH12Q9NPG4 1184 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 DMRT3Q9NQL9 472 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PIH1D3Q9NQM4 214 aaKnown RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms