RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MAN1B1Q9UKM7 699 aa16.8■□□□□ 0.28
CLN3-229ENST00000567963 RNF225M0QZC1 329 aaPredicted RBP16.79■□□□□ 0.28
CLN3-229ENST00000567963 TIMM44O43615 452 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 LCP1P13796 627 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 ATXN3P54252 364 aaPredicted RBP16.79■□□□□ 0.28
CLN3-229ENST00000567963 DAOAP59103 153 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 ZNF234Q14588 700 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 EIF4HQ15056 248 aaKnown RBP16.79■□□□□ 0.28
CLN3-229ENST00000567963 CNGA2Q16280 664 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 CCDC40Q4G0X9 1142 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 PMF1Q6P1K2 205 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 DEFB124Q8NES8 71 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 ZSWIM1Q9BR11 485 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 ITM2CQ9NQX7 267 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 USP36Q9P275 1121 aaKnown RBP16.79■□□□□ 0.28
CLN3-229ENST00000567963 PCDHB4Q9Y5E5 795 aa16.79■□□□□ 0.28
CLN3-229ENST00000567963 WDFY3Q8IZQ1 3526 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 PPP1R3GB7ZBB8 358 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 SYNCRIPO60506 623 aaKnown RBP16.78■□□□□ 0.28
CLN3-229ENST00000567963 TSPAN3O60637 253 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 GABBR2O75899 941 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 BMP6P22004 513 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 HOXD9P28356 352 aaPredicted RBP16.78■□□□□ 0.28
CLN3-229ENST00000567963 CD6P30203 668 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 ZNF445P59923 1031 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 CETN1Q12798 172 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 SEMA3BQ13214 749 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 SYCP2LQ5T4T6 812 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 ADGRF1Q5T601 910 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 TTI2Q6NXR4 508 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 TMPRSS6Q8IU80 811 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 PPM1KQ8N3J5 372 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 SORCS1Q8WY21 1168 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 FOXJ1Q92949 421 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 KAT5Q92993 513 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 GTPBP2Q9BX10 602 aaKnown RBP16.78■□□□□ 0.28
CLN3-229ENST00000567963 CIPCQ9C0C6 399 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 SLC32A1Q9H598 525 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 WSB2Q9NYS7 404 aaPredicted RBP16.78■□□□□ 0.28
CLN3-229ENST00000567963 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-229ENST00000567963 WASF3Q9UPY6 502 aa16.78■□□□□ 0.28
CLN3-229ENST00000567963 PCDH15Q96QU1 1955 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 UPK3BL1B0FP48 263 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 UPK3BL2E5RIL1 263 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 ARHGAP33O14559 1287 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 P4HA2O15460 535 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 MSI1O43347 362 aaKnown RBP16.77■□□□□ 0.28
CLN3-229ENST00000567963 LATS1O95835 1130 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 HLA-FP30511 346 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 RGS7P49802 495 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 COPAP53621 1224 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 FOXC1Q12948 553 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 KLHL10Q6JEL2 608 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 FOXR2Q6PJQ5 311 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 PIP4P1Q86T03 277 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 RGL4Q8IZJ4 473 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 IRGQQ8WZA9 623 aa16.77■□□□□ 0.28
CLN3-229ENST00000567963 TMA16Q96EY4 203 aaKnown RBP16.77■□□□□ 0.28
CLN3-229ENST00000567963 TOE1Q96GM8 510 aaKnown RBP16.77■□□□□ 0.28
CLN3-229ENST00000567963 PCNX2A6NKB5 2137 aa16.77■□□□□ 0.27
CLN3-229ENST00000567963 CKAP5Q14008 2032 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 KCNJ18B7U540 433 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 PIK3R2O00459 728 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 EPHX1P07099 455 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 SYPP08247 313 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 NCAM1P13591 858 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 PRKCHP24723 683 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 MAOBP27338 520 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 TPMTP51580 245 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 ARID5AQ03989 594 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 STILQ15468 1287 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 MSANTD2Q6P1R3 559 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 RRAGAQ7L523 313 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 HDDC3Q8N4P3 179 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 MINDY1Q8N5J2 469 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 NELFBQ8WX92 580 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 PRCCQ92733 491 aaPredicted RBP16.76■□□□□ 0.27
CLN3-229ENST00000567963 SIPA1Q96FS4 1042 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 HSFY1Q96LI6 401 aa16.76■□□□□ 0.27
CLN3-229ENST00000567963 BICDL2A1A5D9 508 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 M0QYV0 167 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 OPHN1O60890 802 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 CALCAP01258 141 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 IGLV3-27P01718 113 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 GNSP15586 552 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 BRD2P25440 801 aaKnown RBP16.75■□□□□ 0.27
CLN3-229ENST00000567963 GCNT1Q02742 428 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 MORC3Q14149 939 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 WDR45BQ5MNZ6 344 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 SERPINA13PQ6UXR4 307 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 KIAA0907Q7Z7F0 614 aaPredicted RBP16.75■□□□□ 0.27
CLN3-229ENST00000567963 EHBP1Q8NDI1 1231 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 CADM4Q8NFZ8 388 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 CLEC4CQ8WTT0 213 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 DNASE2BQ8WZ79 361 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 GPR174Q9BXC1 333 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 SUSD2Q9UGT4 822 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 NFE2L3Q9Y4A8 694 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 CFAP47Q6ZTR5 3102 aa16.75■□□□□ 0.27
CLN3-229ENST00000567963 SPEGQ15772 3267 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms