RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CCDC110Q8TBZ0 833 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 WDR60Q8WVS4 1066 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 MCRS1Q96EZ8 462 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 OSMRQ99650 979 aa13.69□□□□□ -0.22
VPS4A-204ENST00000566354 CAPN14A8MX76 684 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 C1QAP02745 245 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 GNAT1P11488 350 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ACLYP53396 1101 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 NRLP54845 237 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 CDK18Q07002 472 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ZNF667Q5HYK9 610 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 EEF1DP3Q658K8 133 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 PRPF39Q86UA1 669 aaKnown RBP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 CTAGE3PQ8IX95 158 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 PCSK9Q8NBP7 692 aaKnown RBP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 PLEKHG4BQ96PX9 1271 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 BCO2Q9BYV7 579 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 UNC93B1Q9H1C4 597 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 PRMT7Q9NVM4 692 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 C2orf71A6NGG8 1288 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 B2RBV5 119 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 H7C0C1 242 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 AVILO75366 819 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 FESP07332 822 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ATP5OP48047 213 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ZNF143P52747 638 aaPredicted RBP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 CDH6P55285 790 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 SFSWAPQ12872 951 aaKnown RBP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ATF7IP2Q5U623 682 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 CDHR3Q6ZTQ4 885 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ZNF410Q86VK4 478 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 PPM1NQ8N819 430 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 WNT8BQ93098 351 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 E2F7Q96AV8 911 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 CFAP36Q96G28 342 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 CPB2Q96IY4 423 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 WWP1Q9H0M0 922 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 USP29Q9HBJ7 922 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 RAB6BQ9NRW1 208 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 ZC3H7BQ9UGR2 993 aaKnown RBP13.68□□□□□ -0.22
VPS4A-204ENST00000566354 TTLL3Q9Y4R7 772 aa13.68□□□□□ -0.22
VPS4A-204ENST00000566354 AHCYL1O43865 530 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ATP5BP06576 529 aaKnown RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 PRKCHP24723 683 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 YWHAZP63104 245 aaKnown RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 TMPRSS15P98073 1019 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MMRN1Q13201 1228 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 THOC5Q13769 683 aaKnown RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 RCN2Q14257 317 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 NPNTQ6UXI9 565 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ALYREFQ86V81 257 aaKnown RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 RAB3IL1Q8TBN0 382 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 TMEM40Q8WWA1 233 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ADPGKQ9BRR6 497 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 PTPRHQ9HD43 1115 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ARHGEF4Q9NR80 690 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MKS1Q9NXB0 559 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ARMCX1Q9P291 453 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 SCOCQ9UIL1 159 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ENO4A6NNW6 628 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 E5RJQ4 531 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MAP3K7O43318 606 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 GSTA2P09210 222 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ARF4P18085 180 aaPredicted RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 PROZP22891 400 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 SP100P23497 879 aaPredicted RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 RAP1GAPP47736 663 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 TUBP50607 506 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 PTPN11Q06124 597 aaPredicted RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 BST1Q10588 318 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 FAM187BQ17R55 369 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MPZL3Q6UWV2 235 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MAP7D3Q8IWC1 876 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 LSM14AQ8ND56 463 aaKnown RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 DTX3LQ8TDB6 740 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 LRRC39Q96DD0 335 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 RTP4Q96DX8 246 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MTBPQ96DY7 904 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 PEBP4Q96S96 227 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 TSC22D3Q99576 134 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 CNPY3Q9BT09 278 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 DLGAP2Q9P1A6 1054 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 SIRPGQ9P1W8 387 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 ASB3Q9Y575 518 aa13.67□□□□□ -0.22
VPS4A-204ENST00000566354 MKI67P46013 3256 aaKnown RBP13.67□□□□□ -0.22
VPS4A-204ENST00000566354 TSPAN1O60635 241 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 SMIM24O75264 130 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 RFPL1O75677 317 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 KRT38O76015 456 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 UPP2O95045 317 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 KRT19P08727 400 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 CCNFP41002 786 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 RAB27AP51159 221 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 CDH8P55286 799 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 ITGA7Q13683 1181 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 TBCCQ15814 346 aa13.66□□□□□ -0.22
VPS4A-204ENST00000566354 SYCP2LQ5T4T6 812 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms