RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 NOP9Q86U38 636 aaKnown RBP13.93□□□□□ -0.18
CLK3-213ENST00000563842 ZNF513Q8N8E2 541 aaPredicted RBP13.93□□□□□ -0.18
CLK3-213ENST00000563842 ZNF397Q8NF99 534 aaPredicted RBP13.93□□□□□ -0.18
CLK3-213ENST00000563842 TSTD1Q8NFU3 115 aa13.93□□□□□ -0.18
CLK3-213ENST00000563842 UCMAQ8WVF2 138 aa13.93□□□□□ -0.18
CLK3-213ENST00000563842 DDX1Q92499 740 aaKnown RBP13.93□□□□□ -0.18
CLK3-213ENST00000563842 BHMTQ93088 406 aa13.93□□□□□ -0.18
CLK3-213ENST00000563842 POLMQ9NP87 494 aaPredicted RBP13.93□□□□□ -0.18
CLK3-213ENST00000563842 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
CLK3-213ENST00000563842 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLK3-213ENST00000563842 PLK2Q9NYY3 685 aa13.93□□□□□ -0.18
CLK3-213ENST00000563842 SDK1Q7Z5N4 2213 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 OTOGLQ3ZCN5 2332 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 EP300Q09472 2414 aaPredicted RBP13.92□□□□□ -0.18
CLK3-213ENST00000563842 GOLGA6L19H0YKK7 550 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 NPC1O15118 1278 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 KLF8O95600 359 aaPredicted RBP13.92□□□□□ -0.18
CLK3-213ENST00000563842 TRUB2O95900 331 aaKnown RBP13.92□□□□□ -0.18
CLK3-213ENST00000563842 SERPINC1P01008 464 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 ERBB2P04626 1255 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 MMEP08473 750 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 NOS2P35228 1153 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 GABRB2P47870 512 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 CDR2Q01850 454 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 IQCB1Q15051 598 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 CRY1Q16526 586 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 MPP7Q5T2T1 576 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 SYPL2Q5VXT5 272 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 OLFML1Q6UWY5 402 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 FAM183BPQ6ZVS7 135 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 ERMP1Q7Z2K6 904 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 TAC4Q86UU9 113 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 CCDC117Q8IWD4 279 aaPredicted RBP13.92□□□□□ -0.18
CLK3-213ENST00000563842 DEFB106AQ8N104 65 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 CCDC33Q8N5R6 958 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 ALLCQ8N6M5 410 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 ATP6V0D2Q8N8Y2 350 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 IL17RCQ8NAC3 791 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 TXNDC5Q8NBS9 432 aaKnown RBP13.92□□□□□ -0.18
CLK3-213ENST00000563842 SLC39A13Q96H72 371 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 FCRL2Q96LA5 508 aaPredicted RBP13.92□□□□□ -0.18
CLK3-213ENST00000563842 SLC2A13Q96QE2 648 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 C2orf42Q9NWW7 574 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 TJP2Q9UDY2 1190 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 EBF1Q9UH73 591 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 THADAQ6YHU6 1953 aa13.92□□□□□ -0.18
CLK3-213ENST00000563842 VPS13AQ96RL7 3174 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 GFRA2O00451 464 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 AXIN1O15169 862 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 EPHB6O15197 1021 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 ZBTB24O43167 697 aaPredicted RBP13.91□□□□□ -0.18
CLK3-213ENST00000563842 TIMM44O43615 452 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 TSPAN3O60637 253 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 DAB1O75553 588 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 IGLV3-25P01717 112 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 NTSR1P30989 418 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 NOMO3P69849 1222 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 MESP2Q0VG99 397 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 SIM2Q14190 667 aaPredicted RBP13.91□□□□□ -0.18
CLK3-213ENST00000563842 EIF4HQ15056 248 aaKnown RBP13.91□□□□□ -0.18
CLK3-213ENST00000563842 EMC10Q5UCC4 262 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 CEP68Q76N32 757 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 ANKS1BQ7Z6G8 1248 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 SUMF1Q8NBK3 374 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 ADAM32Q8TC27 787 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 RUBCNQ92622 972 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 RNF34Q969K3 372 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 BTN2A3PQ96KV6 586 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 HHIPQ96QV1 700 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 FAM204AQ9H8W3 233 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 NOCTQ9UK39 431 aaKnown RBP13.91□□□□□ -0.18
CLK3-213ENST00000563842 STAP1Q9ULZ2 295 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 MYO6Q9UM54 1294 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 SMG5Q9UPR3 1016 aaKnown RBP13.91□□□□□ -0.18
CLK3-213ENST00000563842 PLXND1Q9Y4D7 1925 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 USP34Q70CQ2 3546 aa13.91□□□□□ -0.18
CLK3-213ENST00000563842 CEP192Q8TEP8 1941 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 A0A1W2PQC6 194 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 SGK1O00141 431 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 TRIM24O15164 1050 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 F9P00740 461 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 CYP1A1P04798 512 aaPredicted RBP13.9□□□□□ -0.18
CLK3-213ENST00000563842 HNRNPLP14866 589 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-213ENST00000563842 FERP16591 822 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 ABCB4P21439 1286 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 HOXD9P28356 352 aaPredicted RBP13.9□□□□□ -0.18
CLK3-213ENST00000563842 CCR1P32246 355 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 MATKP42679 507 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 ARID5AQ03989 594 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 DMWDQ09019 674 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 TAF5Q15542 800 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 PIK3R6Q5UE93 754 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 NAA35Q5VZE5 725 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 PRR23BQ6ZRT6 265 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 SND1Q7KZF4 910 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-213ENST00000563842 C11orf74Q86VG3 221 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 SFTPA1Q8IWL2 248 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 CHPFQ8IZ52 775 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 HJURPQ8NCD3 748 aaPredicted RBP13.9□□□□□ -0.18
CLK3-213ENST00000563842 WFIKKN2Q8TEU8 576 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms