RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 COL9A2Q14055 689 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 FOXD4L6Q3SYB3 417 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 DCAF12L1Q5VU92 463 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 FOXD4L5Q5VV16 416 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 IL27RAQ6UWB1 636 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 FOXD4L3Q6VB84 417 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 DENND1CQ8IV53 801 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 SCML4Q8N228 414 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 FOXD4L4Q8WXT5 416 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 PRCCQ92733 491 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 ERLEC1Q96DZ1 483 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 IRX2Q9BZI1 471 aaPredicted RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 CISHQ9NSE2 258 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 RASAL2Q9UJF2 1139 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 APOBEC2Q9Y235 224 aaKnown RBP17.2■□□□□ 0.34
CLN3-208ENST00000561505 COQ4Q9Y3A0 265 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 PCDHB9Q9Y5E1 797 aa17.2■□□□□ 0.34
CLN3-208ENST00000561505 C10orf142B7Z368 130 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 SYNCRIPO60506 623 aaKnown RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 CLSTN1O94985 981 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 ZBED1O96006 694 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 CYBBP04839 570 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 KRT13P13646 458 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 RPL13P26373 211 aaKnown RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 HOXD9P28356 352 aaPredicted RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 ZNF445P59923 1031 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 YWHAGP61981 247 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-208ENST00000561505 EDRF1Q3B7T1 1238 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 MPPE1Q53F39 396 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 TMPRSS7Q7RTY8 843 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 ZCCHC9Q8N567 271 aaKnown RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 OR2T3Q8NH03 318 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 HEXIM2Q96MH2 286 aaKnown RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 IL21RQ9HBE5 538 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 TM7SF3Q9NS93 570 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 OLA1Q9NTK5 396 aaKnown RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 STRIP2Q9ULQ0 834 aa17.19■□□□□ 0.34
CLN3-208ENST00000561505 HBS1LQ9Y450 684 aaKnown RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 MUC22E2RYF6 1773 aaPredicted RBP17.19■□□□□ 0.34
CLN3-208ENST00000561505 LAMA5O15230 3695 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 MEI4A8MW99 385 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 CER1O95813 267 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 HLA-FP30511 346 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 MATKP42679 507 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 TKTL1P51854 596 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 ZBTB16Q05516 673 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 ADAM9Q13443 819 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 HLA-BQ31612 363 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 ZNF394Q53GI3 561 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 ADIPOR2Q86V24 386 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 PNPLA1Q8N8W4 532 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 CCDC150Q8NCX0 1101 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 FBXL13Q8NEE6 735 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 GAREM1Q9H706 876 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 FBRSQ9HAH7 460 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 RAB20Q9NX57 234 aa17.18■□□□□ 0.34
CLN3-208ENST00000561505 EIF2B4Q9UI10 523 aaKnown RBP17.18■□□□□ 0.34
CLN3-208ENST00000561505 FNDC3AQ9Y2H6 1198 aaKnown RBP17.18■□□□□ 0.34
CLN3-208ENST00000561505 SLC12A8A0AV02 714 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 XPO1O14980 1071 aaKnown RBP17.17■□□□□ 0.34
CLN3-208ENST00000561505 FLRT2O43155 660 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 PAPSS1O43252 624 aaPredicted RBP17.17■□□□□ 0.34
CLN3-208ENST00000561505 EPHX1P07099 455 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 PRR29P0C7W0 189 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 PTPRNQ16849 979 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 PKDCCQ504Y2 493 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 MPP7Q5T2T1 576 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 UBR7Q8N806 425 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 WFIKKN2Q8TEU8 576 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 SORCS1Q8WY21 1168 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 KCTD13Q8WZ19 329 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 LMLNQ96KR4 655 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 ARID3AQ99856 593 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 ORAI3Q9BRQ5 295 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.17■□□□□ 0.34
CLN3-208ENST00000561505 SLCO1B1Q9Y6L6 691 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 ADAMTS20P59510 1910 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 PTPRBP23467 1997 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 IGSF10Q6WRI0 2623 aa17.17■□□□□ 0.34
CLN3-208ENST00000561505 TULP2O00295 520 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 TSPAN3O60637 253 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 HMBSP08397 361 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 ADGRF1Q5T601 910 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 SERPINA13PQ6UXR4 307 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 ZC3H3Q8IXZ2 948 aaKnown RBP17.16■□□□□ 0.34
CLN3-208ENST00000561505 DDI1Q8WTU0 396 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 TATDN2Q93075 761 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 CDC6Q99741 560 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 ULBP1Q9BZM6 244 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 CIPCQ9C0C6 399 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 KNL1Q8NG31 2342 aa17.16■□□□□ 0.34
CLN3-208ENST00000561505 CABIN1Q9Y6J0 2220 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 PCDHGA12O60330 932 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 STX10O60499 249 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 IGLV3-27P01718 113 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 ACADMP11310 421 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 ACSL1P33121 698 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 SYKP43405 635 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 GRIA4P48058 902 aa17.15■□□□□ 0.34
CLN3-208ENST00000561505 MXI1P50539 228 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms