RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 CD3EAPO15446 510 aaKnown RBP13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 SLC2A4P14672 509 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 EZH2Q15910 746 aaKnown RBP13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 DGUOKQ16854 277 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 SPANXN3Q5MJ09 141 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 SPANXN2Q5MJ10 180 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 CASP12Q6UXS9 341 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 TMC3Q7Z5M5 1100 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 RNF180Q86T96 592 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 HEATR4Q86WZ0 1026 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 ZNF614Q8N883 585 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 TCP10LQ8TDR4 215 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 GDPD5Q8WTR4 605 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 L3MBTL3Q96JM7 780 aaPredicted RBP13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 DEFB129Q9H1M3 183 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 RERGLQ9H628 205 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 SORCS3Q9UPU3 1222 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 MRASO14807 208 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 INPP4BO15327 924 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 RNASEH1O60930 286 aaKnown RBP13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 ZNF135P52742 658 aaPredicted RBP13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 TAB1Q15750 504 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 TIMM50Q3ZCQ8 353 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 ERMARDQ5T6L9 678 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 ARMC3Q5W041 872 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 RETSATQ6NUM9 610 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 ACTRT2Q8TDY3 377 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 CDK5RAP1Q96SZ6 601 aaKnown RBP13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 PRDM16Q9HAZ2 1276 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 DAPK2Q9UIK4 370 aa13.52□□□□□ -0.24
CSPG4P11-201ENST00000560634 SF3B1O75533 1304 aaKnown RBP eCLIP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 MEI4A8MW99 385 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 RAD51BO15315 384 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 STX11O75558 287 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 PDE9AO76083 593 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 PGAM1P18669 254 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 GCNT1Q02742 428 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 ELAVL2Q12926 359 aaKnown RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 TRIM25Q14258 630 aaKnown RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 ACAP1Q15027 740 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 C2CD6Q53TS8 623 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 GLRA4Q5JXX5 417 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 EXOC3L1Q86VI1 746 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 MIER2Q8N344 545 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 FBXO39Q8N4B4 442 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 SPPL2AQ8TCT8 520 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 STARD8Q92502 1023 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 KLK14Q9P0G3 267 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 VPS28Q9UK41 221 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 C15orf41Q9Y2V0 281 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 CCL15-CCL14A0A0B4J2E2 113 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 C1orf232A0A0U1RR37 186 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 ERI2A8K979 691 aaKnown RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 TRDMT1O14717 391 aaKnown RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 MBL2P11226 248 aaPredicted RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 FASTKQ14296 549 aaKnown RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 CCL15Q16663 113 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 KYAT3Q6YP21 454 aaKnown RBP13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 SLC5A5Q92911 643 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 GMCL1Q96IK5 515 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 ACOX2Q99424 681 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 CPNE1Q99829 537 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 NT5MQ9NPB1 228 aa13.52□□□□□ -0.25
CSPG4P11-201ENST00000560634 TET3O43151 1660 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SMNDC1O75940 238 aaKnown RBP eCLIP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 CKMP06732 381 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ALADP13716 330 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 PIK3CGP48736 1102 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 MYL6P60660 151 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 XRCC4Q13426 336 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 C16orf72Q14CZ0 275 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ALFQ53S48 1182 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 C11orf88Q6PI97 169 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SLC47A2Q86VL8 602 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 FAM126BQ8IXS8 530 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 OR56A4Q8NGH8 313 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 STK32AQ8WU08 396 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 VAT1Q99536 393 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 TAS2R13Q9NYV9 303 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SPATA2Q9UM82 520 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 GTF2A1LQ9UNN4 478 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 CNPP09543 421 aaKnown RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF7P17097 686 aaPredicted RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 CCR1P32246 355 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 TOB1P50616 345 aaPredicted RBP13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 BFSP2Q13515 415 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 NFIL3Q16649 462 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SEZ6Q53EL9 994 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 EPHX4Q8IUS5 362 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 TRPC4APQ8TEL6 797 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 KAT2BQ92831 832 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 CENPTQ96BT3 561 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SEPHS2Q99611 448 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 MAN1C1Q9NR34 630 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ADPRHL2Q9NX46 363 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 ITGA11Q9UKX5 1188 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 A0A096LPK6 155 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 SLC12A8A0AV02 714 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 THP07101 528 aa13.51□□□□□ -0.25
CSPG4P11-201ENST00000560634 CYP2A7P20853 494 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms