RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 GAD2Q05329 585 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 KLHL30Q0D2K2 578 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 LMAN2Q12907 356 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 FOXC1Q12948 553 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 TRPC3Q13507 836 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 TDRD12Q587J7 1177 aaKnown RBP14.7□□□□□ -0.06
LDLR-213ENST00000560502 TRIM61Q5EBN2 209 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 SPDYCQ5MJ68 293 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 C10orf76Q5T2E6 689 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 HECTD3Q5T447 861 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 HGSNATQ68CP4 663 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 UNQ6494/PRO21346Q6UXR6 183 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 SYT12Q8IV01 421 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 REXO1L1PQ8IX06 675 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 C17orf53Q8N3J3 647 aaPredicted RBP14.7□□□□□ -0.06
LDLR-213ENST00000560502 SCAMP5Q8TAC9 235 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 KCNV2Q8TDN2 545 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 WBP2Q969T9 261 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 IMPG2Q9BZV3 1241 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 TSGA10Q9BZW7 698 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 CCSER2Q9H7U1 834 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 DMAP1Q9NPF5 467 aaPredicted RBP14.7□□□□□ -0.06
LDLR-213ENST00000560502 ZDHHC4Q9NPG8 344 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 TMEM74BQ9NUR3 256 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 MYO1AQ9UBC5 1043 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 NXF1Q9UBU9 619 aaKnown RBP14.7□□□□□ -0.06
LDLR-213ENST00000560502 HCN2Q9UL51 889 aa14.7□□□□□ -0.06
LDLR-213ENST00000560502 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 TCRBV21S2A2A0A5A6 115 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 AKR1B10O60218 316 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 TULP3O75386 442 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 TBXAS1P24557 533 aaPredicted RBP14.69□□□□□ -0.06
LDLR-213ENST00000560502 PIK3CAP42336 1068 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 KIF11P52732 1056 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 DRAP1Q14919 205 aaPredicted RBP14.69□□□□□ -0.06
LDLR-213ENST00000560502 ARMCX6Q7L4S7 300 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 BBS7Q8IWZ6 715 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 TMEFF1Q8IYR6 380 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 FUKQ8N0W3 1084 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 KDF1Q8NAX2 398 aaPredicted RBP14.69□□□□□ -0.06
LDLR-213ENST00000560502 ZMIZ2Q8NF64 920 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 HMGB4Q8WW32 186 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 TAF4BQ92750 862 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 SMARCD1Q96GM5 515 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 SDCBP2Q9H190 292 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 HAUS4Q9H6D7 363 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 COMMD8Q9NX08 183 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 TRMT1Q9NXH9 659 aaKnown RBP14.69□□□□□ -0.06
LDLR-213ENST00000560502 GMIPQ9P107 970 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 BCCIPQ9P287 314 aaKnown RBP eCLIP14.69□□□□□ -0.06
LDLR-213ENST00000560502 PILRBQ9UKJ0 227 aa14.69□□□□□ -0.06
LDLR-213ENST00000560502 USP27XA6NNY8 438 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 GREM1O60565 184 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 VNN1O95497 513 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 TOP3BO95985 862 aaKnown RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 ENGP17813 658 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 SPINK2P20155 84 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 HOXD12P35452 270 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 EIF4A3P38919 411 aaKnown RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 DPP6P42658 865 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 PGFP49763 221 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 CDH8P55286 799 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 BIRC3Q13489 604 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 BYSLQ13895 437 aaKnown RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 ASTE1Q2TB18 679 aaPredicted RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 ZNF699Q32M78 642 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 DNTTIP2Q5QJE6 756 aaKnown RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 LYSMD4Q5XG99 296 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 SLC23A3Q6PIS1 610 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 IRF2BP2Q7Z5L9 587 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 TMEM25Q86YD3 366 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 TERB1Q8NA31 727 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 DEFB124Q8NES8 71 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 TAS1R2Q8TE23 839 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 SHC3Q92529 594 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 GATA6Q92908 595 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 C16orf45Q96MC5 204 aaPredicted RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 ADAM33Q9BZ11 813 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 FAM124BQ9H5Z6 455 aaPredicted RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 CD248Q9HCU0 757 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 SPHK2Q9NRA0 654 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 KRT82Q9NSB4 513 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 CHORDC1Q9UHD1 332 aaPredicted RBP14.68□□□□□ -0.06
LDLR-213ENST00000560502 SH3BP1Q9Y3L3 701 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 STARD13Q9Y3M8 1113 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 ZZEF1O43149 2961 aa14.68□□□□□ -0.06
LDLR-213ENST00000560502 ATXN2Q99700 1313 aaKnown RBP14.67□□□□□ -0.06
LDLR-213ENST00000560502 MAP3K13O43283 966 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 KRT86O43790 486 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 PHACTR2O75167 634 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 HLA-DRAP01903 254 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 TNNT1P13805 278 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 GABRG2P18507 467 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 ITPKAP23677 461 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 VAV2P52735 878 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 APBA1Q02410 837 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 NCOA4Q13772 614 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 SLC18A3Q16572 532 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 UAP1L1Q3KQV9 507 aa14.67□□□□□ -0.06
LDLR-213ENST00000560502 ZNF667Q5HYK9 610 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms