RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZBTB14O43829 449 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 TGDSO95455 350 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 PRKCBP05771 671 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 HOXC6P09630 235 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 FGFR3P22607 806 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 EIF4BP23588 611 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 IL4RP24394 825 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 CDK7P50613 346 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 TBL3Q12788 808 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 PDE1CQ14123 709 aaPredicted RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 PDK1Q15118 436 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 ZNF667Q5HYK9 610 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 MARK2Q7KZI7 788 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 APOBEC3FQ8IUX4 373 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 TTC13Q8NBP0 860 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 MAPK15Q8TD08 544 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 TFB1MQ8WVM0 346 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 KLHL4Q9C0H6 718 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 SSU72Q9NP77 194 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 GPRC5DQ9NZD1 345 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 SIRPGQ9P1W8 387 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 SIX4Q9UIU6 781 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 CDH22Q9UJ99 828 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 POMPQ9Y244 141 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 KIAA1217Q5T5P2 1943 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 SDR42E2A6NKP2 422 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 A8MXQ7 604 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 MAGEC1O60732 1142 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 HNRNPCL1O60812 293 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 POLR2BP30876 1174 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 GLRBP48167 497 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 YWHAEP62258 255 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 PTPN11Q06124 597 aaPredicted RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 PDK3Q15120 406 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 SLC9B1Q4ZJI4 515 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 TEDDM1Q5T9Z0 273 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 PDPK2PQ6A1A2 396 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 PLD6Q8N2A8 252 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 PIWIL2Q8TC59 973 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 SNRNP27Q8WVK2 155 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 CNKSR2Q8WXI2 1034 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 PDP2Q9P2J9 529 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 MSCO60682 206 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 KRT38O76015 456 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 ATG7O95352 703 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 GSTA2P09210 222 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 IQCF3P0C7M6 154 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 MGAT1P26572 445 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 NAMPTP43490 491 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 USP46P62068 366 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 IRF9Q00978 393 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 TLR1Q15399 786 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 GJC2Q5T442 439 aaPredicted RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 ANGEL2Q5VTE6 544 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 SLFN12LQ6IEE8 588 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 ZNF534Q76KX8 674 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 WDR75Q8IWA0 830 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 UBR7Q8N806 425 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 ZNF781Q8N8C0 355 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 C1orf127Q8N9H9 656 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 ACVR1CQ8NER5 493 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 CMASQ8NFW8 434 aaPredicted RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 RNF157Q96PX1 679 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 OR52B2Q96RD2 323 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 PCYT2Q99447 389 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 SNRNP25Q9BV90 132 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 DHX33Q9H6R0 707 aaKnown RBP12.72□□□□□ -0.37
LDLR-205ENST00000557933 CNTN6Q9UQ52 1028 aa12.72□□□□□ -0.37
LDLR-205ENST00000557933 TRIP11Q15643 1979 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 GSRP00390 522 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 EPHA3P29320 983 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 PMLP29590 882 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 SOX11P35716 441 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 NUDT2P50583 147 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 FOLH1Q04609 750 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 CYTH1Q15438 398 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 C6orf52Q5T4I8 152 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 KCNT2Q6UVM3 1135 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 RBM44Q6ZP01 1051 aaKnown RBP12.71□□□□□ -0.37
LDLR-205ENST00000557933 PDSS2Q86YH6 399 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 SULF1Q8IWU6 871 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 MICALL2Q8IY33 904 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 ST13P4Q8IZP2 240 aaPredicted RBP12.71□□□□□ -0.37
LDLR-205ENST00000557933 COPS5Q92905 334 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 ABTB1Q969K4 478 aaPredicted RBP12.71□□□□□ -0.37
LDLR-205ENST00000557933 C7orf26Q96N11 449 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 TUBB6Q9BUF5 446 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 KLC2Q9H0B6 622 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 SEMA6AQ9H2E6 1030 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 MMADHCQ9H3L0 296 aaPredicted RBP12.71□□□□□ -0.37
LDLR-205ENST00000557933 COPS7BQ9H9Q2 264 aaPredicted RBP12.71□□□□□ -0.37
LDLR-205ENST00000557933 RSAD1Q9HA92 442 aa12.71□□□□□ -0.37
LDLR-205ENST00000557933 C15orf38-AP3S2A0A0A6YYH1 394 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 LSM8O95777 96 aaKnown RBP12.71□□□□□ -0.38
LDLR-205ENST00000557933 CHRNGP07510 517 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 SERPINA6P08185 405 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 FGF3P11487 239 aaPredicted RBP12.71□□□□□ -0.38
LDLR-205ENST00000557933 YBX3P16989 372 aaKnown RBP eCLIP12.71□□□□□ -0.383e-9■□□□□ 8.2
LDLR-205ENST00000557933 CRABP2P29373 138 aa12.71□□□□□ -0.38
LDLR-205ENST00000557933 ARL2P36404 184 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms